Pinned Repositories
bam-vcf-qc
BAM / VCF QC
CORGi
CORGi - COmplex Rearrangement analysis with Graph-search
CORGi2
exogene
A workflow for identifying viral integrations in both short and long read data
extract_region
a quick script for extracting portions of reads that span specified reference coordinates
filt-sv
A workflow for filtering and annotating SVs from PacBio CLR long reads
hgt-id
HGT-ID, hg38 fork
neat-genreads
NEAT read simulation tools
telogator
A method for measuring chromosome-specific telomere length from long reads
telogator2
A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.
zstephens's Repositories
zstephens/neat-genreads
NEAT read simulation tools
zstephens/telogator
A method for measuring chromosome-specific telomere length from long reads
zstephens/telogator2
A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.
zstephens/CORGi
CORGi - COmplex Rearrangement analysis with Graph-search
zstephens/exogene
A workflow for identifying viral integrations in both short and long read data
zstephens/bam-vcf-qc
BAM / VCF QC
zstephens/CORGi2
zstephens/extract_region
a quick script for extracting portions of reads that span specified reference coordinates
zstephens/filt-sv
A workflow for filtering and annotating SVs from PacBio CLR long reads
zstephens/hgt-id
HGT-ID, hg38 fork
zstephens/neat-repeat
NEAT-Repeat, a reference assembly repetition finder
zstephens/pacbio-tools
Various scripts and workflows for processing PacBio data
zstephens/pb-motif
PB-Motif: A method for identifying gene/pseudogene rearrangements with PacBio long reads