Pinned Repositories
OptimalTransport.jl
Optimal transport algorithms for Julia
EMDNetworkSimplex.jl
Julia wrapper for Nicolas Bonneel's fast C++ EMD solver
gWOT
Global Waddington-OT
hard86
Intel 8086 emulator in C/C++ with support for virtual devices
linked-list-asm
linked list in x86 assembly (with some MASM macros)
locaTE.jl
Dynamical information enables inference of gene regulation at single-cell scale
mfl
Trajectory Inference via Mean-field Langevin in Path Space
pcurvepy
Principal curves implementation (Hastie '89) in Python
StationaryOT
Dynamic inference from single-cell snapshots by optimal transport
wtf
wasserstein tensor factorisation
zsteve's Repositories
zsteve/gWOT
Global Waddington-OT
zsteve/StationaryOT
Dynamic inference from single-cell snapshots by optimal transport
zsteve/locaTE.jl
Dynamical information enables inference of gene regulation at single-cell scale
zsteve/mfl
Trajectory Inference via Mean-field Langevin in Path Space
zsteve/OptimalTransport.jl
Optimal transport algorithms for Julia
zsteve/locaTE-paper
code and data for reproducing results from locaTE paper
zsteve/SONG
This Repository Contains the Source Code for the Python Implementation of Self Organizing Nebulous Growths
zsteve/EMDNetworkSimplex.jl
Julia wrapper for Nicolas Bonneel's fast C++ EMD solver
zsteve/ApproxBayes.jl
Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia
zsteve/Beeline
BEELINE: evaluation of algorithms for gene regulatory network inference
zsteve/BoolODE
Git Repo for simulating Boolean Models
zsteve/CeSpGRN
CeSpGRN: Inferring cell specific GRN using single-cell gene expression data
zsteve/Discretizers.jl
A Julia package for data discretization and label maps
zsteve/GeodesicSinkhorn.jl
Geodesic Sinkhorn
zsteve/GRISLI
GRISLI: Gene Regulation Inference for Single-cell with LInear differential equations and Peanian kernel velocities
zsteve/homepage
zsteve/HyperGraphs.jl
A package to represent high-order relationships between objects of any type
zsteve/InformationMeasures.jl
Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.
zsteve/IPMeasures.jl
Implementation of Integral Probability Measures in Julia
zsteve/multitrack_clonal_haematopoiesis
A multi-track landscape of haematopoiesis informed by cellular barcoding and agent-based modelling
zsteve/Muon.jl
Muon for Julia
zsteve/partitioned_networks
Partitioned measure networks
zsteve/PBA
Population balance analysis
zsteve/QROT
Manifold Learning with Sparse Regularised Optimal Transport
zsteve/SCODE
SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
zsteve/SINCERITIES
SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.
zsteve/SpectralClustering.jl
Spectral clustering algorithms written in Julia
zsteve/TENET
TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.
zsteve/TensorToolbox.jl
Julia package for tensors as multidimensional arrays, with functionalty within Tucker format, Kruskal (CP) format, Hierarchical Tucker format and Tensor Train format.
zsteve/tpot
Topological Optimal Transport