zwdzwd
Working on Computational Epigenetics at CHOP and UPenn
Children's Hospital of PhiladelphiaPhiladelphia
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
biqr
bisulfite sequence analysis
GDC_DNA_methylation_QC
sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
sesamize
sesamize a minfi ratioSet or RGSet
transvar
TransVar - multiway annotator for precision medicine
utils
some utility C code
wheatmap
Complex Layout of Grid Graphics Made Simple
wzmetagene
Create sub-intervals from intervals
zwdzwd's Repositories
zwdzwd/transvar
TransVar - multiway annotator for precision medicine
zwdzwd/sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
zwdzwd/wheatmap
Complex Layout of Grid Graphics Made Simple
zwdzwd/utils
some utility C code
zwdzwd/wzmetagene
Create sub-intervals from intervals
zwdzwd/GDC_DNA_methylation_QC
zwdzwd/sesamize
sesamize a minfi ratioSet or RGSet
zwdzwd/bioconda-recipes
Conda recipes for the bioconda channel.
zwdzwd/biscuiteer
tools for analysing Biscuit (https://github.com/zwdzwd/biscuit/wiki/Align-bisulfite-converted-reads) output
zwdzwd/sesameData
Supporting data for SeSAMe package
zwdzwd/blog
zwdzwd/htslib
C library for high-throughput sequencing data formats
zwdzwd/illuminaio
🔬 R package: This is the Bioconductor devel version of the illuminaio package.
zwdzwd/InfiniumArrayAnnotation
Collection of Infinium Array Annotation
zwdzwd/klib
A standalone and lightweight C library
zwdzwd/libsamtools0119
The old samtools code forked from samtools repo
zwdzwd/miser
convenience package for loading IDATs off of GEO (short for "sesamizer")
zwdzwd/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
zwdzwd/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
zwdzwd/PMD2017Analysis
zwdzwd/quickunmap
Get unmapped reads quickly
zwdzwd/r-source
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
zwdzwd/RnBeads
Git working Repo synced to the Bioconductor: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html
zwdzwd/sesame_docker
build docker image for sesame
zwdzwd/sgsl
A lightweight subset of GNU scientific library
zwdzwd/termdown
Countdown timer and stopwatch in your terminal
zwdzwd/testcode
zwdzwd/workhorse
Core set of scripts to run Sesame pipeline workflow
zwdzwd/wzard
my R utility functions
zwdzwd/zwdzwd.github.io