zx0223winner/HSDFinder

Issues

• Tools for finding the gene duplications in genomes

  #1 opened 4 months ago by zx0223winner
  1

• How to visualize HSDs data in line graph? How to find common HSDs among species? Shall I rerun the HSD finder with new parameters?

  #8 opened 2 years ago by zx0223winner
  0

• What criteria was used to collect the HSDs in HSDatabase?

  #7 opened 2 years ago by zx0223winner
  2

• Heatmap plotting suggestion

  #6 opened 2 years ago by zx0223winner
  3

• KO database error, FileNotFoundError: [Errno 2] No such file or directory: 'KO database and its category.keg'

  #5 opened 2 years ago by zx0223winner
  2

• How to acquire the KEGG KO information file?

  #3 opened 2 years ago by zx0223winner
  3

• I generated the BLAST hits file using diamond not by blast, is that the problem?

  #4 opened 2 years ago by zx0223winner
  0

• KeyError: 'g11714.t1' found when running HSDFinder

  #2 opened 2 years ago by zx0223winner
  2