Automatic Liver Tumor Segmentation on Dynamic Contrast Enhanced MRI Using 4D Information: Deep Learning Model Based on 3D Convolution and Convolutional LSTM
This is the source code for liver tumor segmentation with 3D CNN and Conv-LSTM model.
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Data pre-processing for liver segmentation:
Run python3 Data_prepropcess.py
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Liver segmentation with 3D U-net model:
Run python3 Liver_seg_model.py
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Liver patch extraction:
Run python3 Liver_patch_extraction.py
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Tumor patch extraction:
Run python3 Tumor_patch_extraction.py
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Tumor segmentation with combined CNN and Conv-LSTM model:
2.5D version (2D CNN + Conv-LSTM): Run python3 Tumor_seg_model_2DCT.py
3D version (3D CNN + Conv-LSTM): Run python3 Tumor_seg_model_3DCT.py