SAM2BAM conversion not sucessful
Closed this issue · 1 comments
CS791 commented
Hi!
The error pop in while using sam2bam.sh script:
"./BSMAPz/sam2bam.sh BSMAP_Output/epiRIL-368_4C_Rep1_L2.sam
Converting SAM to BAM ...
[W::sam_read1] Parse error at line 11
[main_samview] truncated file.
SAM2BAM conversion not sucessful.
BSMAP_Output/epiRIL-368_4C_Rep1_L2.sam remains unchanged."
Any help is much appriciated
Thank you!
Best Regards
SC
zyndagj commented
I updated the sam2bam.sh script in version 1.1.2, which should solve your issue.