zyndagj/BSMAPz

Issues

• methratio.py ERROR in conda and multicores of CPU: list index out of range

  #47 opened 7 months ago
  0

• How to calculate sequencing depth

  #46 opened a year ago
  1

• methratio.py memory issue

  #45 opened a year ago
  0

• "AssertionError: String length does not match CIGAR" when running methratio.py

  #44 opened 2 years ago
  0

• Methratio.py does not handle files

  #43 opened 2 years ago
  4

• methratio.py AssertionError

  #42 opened 2 years ago
  3

• When I run the script I get the error CMD: R --vanilla

  #41 opened 2 years ago
  1

• "Illegal instruction" message when I launch bsmapz

  #40 opened 2 years ago
  0

• methdiff.py error

  #39 opened 3 years ago
  1

• OverflowError in methratio.py

  #38 opened 3 years ago
  0

• methratio.py and Identification of methylated cytosine sites

  #37 opened 3 years ago
  0

• Segmentation fault - core dumped

  #36 opened 3 years ago
  0

• ZeroDivisionError

  #35 opened 3 years ago
  4

• Significantly different in number of covered cytosines between bsmap 2.90 and BSMAPz

  #34 opened 3 years ago
  4

• ZeroDivisionError: float division by zero

  #33 opened 3 years ago
  1

• methratio.py error

  #32 opened 4 years ago
  0

• Float point error in methratio.py

  #31 opened 4 years ago
  4

• query regarding methylation level from methylratio output file.

  #29 opened 4 years ago
  1

• methratio exception

  #28 opened 4 years ago
  8

• Segmentation Fault when Loading Reference

  #27 opened 4 years ago
  3

• methratio.py OverflowError

  #22 opened 4 years ago
  5

• SAM2BAM conversion not sucessful

  #20 opened 4 years ago
  1

• buffer overflow detected***

  #19 opened 4 years ago
  8

• bsmapz -h returns exit-code 1

  #18 opened 4 years ago
  0

• Requirements in README doesn't mention zlib.

  #17 opened 4 years ago
  0

• methratio.py still cannot work on python3

  #16 opened 5 years ago
  2

• methratio.py 'S not a valid CIGAR character'

  #15 opened 5 years ago
  5

• installation problem

  #14 opened 5 years ago
  3

• Differences to original 2.90?

  #11 opened 5 years ago
  1

• methratio.py -t end repair option does not work

  #10 opened 5 years ago
  3

• Overlapping reads leads to different results with bsp and bam/sam inputs

  #8 opened 5 years ago
  1

• methratio.py: samtools view: invalid option -- 'X'

  #7 opened 5 years ago
  4

• bsmap bigwig format

  #5 opened 6 years ago
  2

• Questions about the bam output

  #4 opened 7 years ago
  2

• methdiff.py error

  #3 opened 5 years ago
  15

• pair orientation

  #2 opened 8 years ago
  4

• issue with methylratio.py

  #1 opened 8 years ago
  2