zztsuperpower

zztsuperpower's Stars

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 in Pytorch

  Language:Python948110

• kyegomez/AlphaFold3

  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

  Language:Python70292

• academicpages/academicpages.github.io

  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

  Language:JavaScript11.9k42.7k

• OATML-Markslab/Tranception

  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

  Language:Python13725

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.7k325

• karpathy/nanoGPT

  The simplest, fastest repository for training/finetuning medium-sized GPTs.

  Language:Python36.5k5.7k

• microsoft/evodiff

  Generation of protein sequences and evolutionary alignments via discrete diffusion models

  Language:Python48670

• lucidrains/chroma-pytorch

  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

  Language:Python15823

• salesforce/progen

  Official release of the ProGen models

  Language:Python608112

• KarchinLab/bigmhc

  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

  Language:Jupyter Notebook459

• samsinai/FLEXS

  Fitness landscape exploration sandbox for biological sequence design.

  Language:Jupyter Notebook15322

• shap/shap

  A game theoretic approach to explain the output of any machine learning model.

  Language:Jupyter Notebook22.6k3.3k

• tencent-ailab/DrugOOD

  OOD Dataset Curator and Benchmark for AI-aided Drug Discovery

  Language:Python15021

• CSUBioGroup/PGMG

  The official PyTorch implementation of PGMG: A Pharmacophore-Guided Deep Learning Approach for Bioactive Molecule Generation.

  Language:Python547

• baaihealth/OpenComplex

  Trainable PyTorch framework for developing protein, RNA and complex models.

  Language:Python25933

• blt2114/ProtDiff_SMCDiff

  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/abs/2206.04119

  Language:Python679

• yangkky/Machine-learning-for-proteins

  Listing of papers about machine learning for proteins.

  1.5k198

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.4k171

• XSLiuLab/Seq2Neo

  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction

  Language:Python212

• google/svcca

  Language:Jupyter Notebook623138

• ehoogeboom/e3_diffusion_for_molecules

  Language:Python432112

• tuna/thuthesis

  LaTeX Thesis Template for Tsinghua University

  Language:TeX4.5k1.1k

• a96123155/TransPHLA-AOMP

  Language:Jupyter Notebook4014

• jadore801120/attention-is-all-you-need-pytorch

  A PyTorch implementation of the Transformer model in "Attention is All You Need".

  Language:Python8.8k2k

• Optimization-AI/LibAUC

  LibAUC: A Deep Learning Library for X-Risk Optimization

  Language:Python28538