4ment

University of Technology SydneyAustralia

Pinned Repositories

aiv-migratory-flyways
Language:Python2 3 00
flc
Local clock model using relaxed and strict clocks
Language:Java2 3 53
gradient-benchmark
automatic/analytical differentiation benchmark
Language:Python3 3 02
marginal-experiments
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
Language:Python4 5 02
phylostan
Phylogenetic inference using Stan
Language:Python23 10 45
physher
A multi-algorithmic framework for phylogenetic inference
Language:C14 7 21
seqotron
Alignment editor for Mac OS X
Language:Objective-C28 8 54
SWeBLAST
Sliding window web-based BLAST
Language:Python3 3 30
torchtree
A probabilistic framework in PyTorch for phylogenetic models
Language:Jupyter Notebook14 4 33
sts
Sequential Tree Sampler for online phylogenetics
Language:C++16 9 493

4ment's Repositories

4ment/phylostan
Phylogenetic inference using Stan
Language:Python23 10 45
4ment/physher
A multi-algorithmic framework for phylogenetic inference
Language:C14 7 21
4ment/torchtree
A probabilistic framework in PyTorch for phylogenetic models
Language:Jupyter Notebook14 4 33
4ment/gradient-benchmark
automatic/analytical differentiation benchmark
Language:Python3 3 02
4ment/flc
Local clock model using relaxed and strict clocks
Language:Java2 3 53
4ment/phylojax
Language:Python2 2 00
4ment/torchtree-bito
Language:Python2 2 0
4ment/beaglepy
hms cutie beagle pie
Language:C++1 3 01
4ment/logstat
Language:Python1 2 0
4ment/torchtree-physher
Language:Python1 3 1
4ment/torchtree-scipy
Package providing extra functionalities from SciPy
Language:Python1 2 0
4ment/torchtree-tensorflow
Language:Python1 3 0
4ment/beagle-lib
general purpose library for evaluating the likelihood of sequence evolution on trees
Language:C++2 0
4ment/beast-mcmc
Bayesian Evolutionary Analysis Sampling Trees
Language:Java3 0
4ment/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell3 0
4ment/bito
Python-interface C++ library implementing subsplit Bayes networks for Bayesian phylogenetics
Language:C++2 0
4ment/CBAN
releases of beast2 packaged zip files in a reliable location
Language:JavaScript3 0
4ment/docker-images
Repository of Docker images created by Continuum Analytics
Language:Dockerfile1 0
4ment/dodonaphy-experiments
Language:Python2 0
4ment/hamiltorch
PyTorch-based library for Riemannian Manifold Hamiltonian Monte Carlo (RMHMC) and inference in Bayesian neural networks
Language:Jupyter Notebook2 0
4ment/NUTS
python version of the No-U-Turn Sampler (NUTS) from Hoffman & Gelman, 2011
Language:Python1 0
4ment/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
Language:C++2 0
4ment/scripts
Language:Python3 0
4ment/skyplotr
Language:R2 0
4ment/tippartials
Language:Jupyter Notebook2 0
4ment/torchtree-experimental
Language:Python2 0
4ment/torchtree-experiments
Language:R2 0
4ment/torchtree-notebooks
Language:Jupyter Notebook3 0
4ment/torchtree-plugin-template
A GitHub template for developing a torchtree plugin
Language:Makefile2 0
4ment/treetime_validation
Language:Python1 0