logstat is a simple program replicating some of tracer's functionalities. It takes a posterior sample as input and outputs the effective sample size (ESS) and statistics such as the mean, meadian, and 95% higher posterior density (HPD).
To install logstat from source you can run
pip install git+https://github.com/4ment/logstator
git clone https://github.com/4ment/logstat
pip install logstat/Check install
logstat --helplogstat parses log files generated by programs such as beast.
logstat summarize samples.log --burnin 0.2Multiple sample files can be provided and the burnin can be specified for each of them using the same order.
logstat summarize samples1.log samples2.log --burnin 0.2 --burnin 0.3Distributed under the GPLv3 License. See LICENSE for more information.
logstat makes use of the following libraries and tools, which are under their own respective licenses: