Day | Time | Subject | Lecturer |
---|---|---|---|
Day 1 - Monday | 9:15 - 12 | NGS data - Workflow, formats and programs | Thorfinn Sand Korneliussen |
Day 2 - Tuesday | 13:15 - 16 | Mapping - Suffix arrays and Burrows-Wheeler Transform | Rasmus A. Henriksen |
Day 3 - Friday | 9:15 - 12 | K-mers and metagenomic sequence classification | Abigail Ramsøe |
X11 forwarding method will allow you to start a graphical application on the remote system and forward this application's windows to your local system. We need to enable X11 forwarding to view the plots we will be generating for the exercises.
We use -X
option to enable X11 forwarding over SSH:
$ ssh -X <your_username>@<server_name_or_ip>
Replace with your remote server username. For example:
$ ssh -X isin@emily.popgen.dk
If you are working on the emily server, all commands in the following seven exercises will be relative to the base directory called /TEACHING/BIOINF23/adv_binf_2023_week1
day1
├── data
│ ├── alignment
│ ├── fasta
│ ├── fastq
│ ├── reference_fasta
│ └── reference_fasta_hs37d5
├── exercises
│ ├── alignment_formats
│ ├── mapdamage
│ ├── trimming
│ └── variant_call_format
├── Makefile
└── README.md