Pinned Repositories
adv_binf_2023_week1
Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2023
angsd
Program for analysing NGS data.
asaMap
rbinom
maf2fasta
Program to generate fasta from maf files (multiple alignment files)
newick
Small code for parsing annoying newick trees recursively
ngsPSMC
NgsRelate
ngsRelate_HMM
refFinder
Program/lib to extract bases from positions in fastafiles
tmon
ANGSD's Repositories
ANGSD/angsd
Program for analysing NGS data.
ANGSD/NgsRelate
ANGSD/ngsPSMC
ANGSD/newick
Small code for parsing annoying newick trees recursively
ANGSD/tmon
ANGSD/maf2fasta
Program to generate fasta from maf files (multiple alignment files)
ANGSD/adv_binf_2023_week1
Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2023
ANGSD/asaMap
rbinom
ANGSD/ngsRelate_HMM
ANGSD/refFinder
Program/lib to extract bases from positions in fastafiles
ANGSD/decluster
ANGSD/a2a
anything to anything
ANGSD/abbababa2000
ANGSD/ANGSD.github.io
The Unix Shell
ANGSD/bam2prof
the subprogram in schmutzi but rewritten using htslib
ANGSD/bimtool
ANGSD/bioconda-recipes
Conda recipes for the bioconda channel.
ANGSD/compQscore
Little program to count qscore vs qscore
ANGSD/emAccel
ANGSD/fasta_splitter_triage
ANGSD/getliners
ANGSD/metabeta
ANGSD/metaDMG-cpp
ANGSD/misc
Small usefull program (not finished and not user friendly for other than me)
ANGSD/mpileupreader
mpileupreader
ANGSD/read_overlap
ANGSD/smallBam
33 small BAMs from CEU population, used for testing correctness of angsd
ANGSD/splitbam
Program to split a bam such that a read does not span multiple reads. Assumes
ANGSD/squeezer
ANGSD/trimfastq