ANGSD

ANGSD's Stars

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k1021.3k576

• chrchang/plink-ng

  A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

  Language:C40427236122

• ANGSD/angsd

  Program for analysing NGS data.

  Language:C++2242156951

• statgen/bamUtil

  Language:C++86175229

• smithlabcode/preseq

  Software for predicting library complexity and genome coverage in high-throughput sequencing.

  Language:C++78146616

• RAHenriksen/NGSNGS

  NGSNGS: Next generation simulator for next generation sequencing data

  Language:C++395154

• malthesr/winsfs

  Site frequency spectrum estimation based on window expectation-maximisation algorithm

  Language:Rust131110

• isinaltinkaya/vcfgl

  Genotype likelihood simulator for VCF/BCF files

  Language:C++8341

• ANGSD/newick

  Small code for parsing annoying newick trees recursively

  Language:C5200

• aalbrechtsen/getliner

  getliner

  Language:C++1310