Pinned Repositories
AlexVCaron.github.io
boiteaclou.github.io
bundle_mpc
longitudinal_image_statistics
Short script to compute stability statistics on image timeseries of a group of subjects. Available statistics are : intra and inter subject variation and pearson correlation coefficients, I2C2 coefficient. Bootstrapping is available for variation coefficient and I2C2.
mrHARDI
Multi-usage python library for processing and modeling of diffusion MRI images. For pipelining tools, see mrHARDIflow at https://github.com/AlexVCaron/mrHARDIflow.
versaFlow
versaFlow is an automated multi-resolution diffusion MRI processing pipeline implemented in Nextflow.
containers-scilus
Files needed to build a container to run all scilus flows.
dmriqcpy
Diffusion MRI Quality Check in python
scilpy
The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
tractoflow
TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
AlexVCaron's Repositories
AlexVCaron/longitudinal_image_statistics
Short script to compute stability statistics on image timeseries of a group of subjects. Available statistics are : intra and inter subject variation and pearson correlation coefficients, I2C2 coefficient. Bootstrapping is available for variation coefficient and I2C2.
AlexVCaron/mrHARDI
Multi-usage python library for processing and modeling of diffusion MRI images. For pipelining tools, see mrHARDIflow at https://github.com/AlexVCaron/mrHARDIflow.
AlexVCaron/versaFlow
versaFlow is an automated multi-resolution diffusion MRI processing pipeline implemented in Nextflow.
AlexVCaron/AlexVCaron.github.io
AlexVCaron/bundle_mpc
AlexVCaron/container_workshop
AlexVCaron/containers-scilus
Files needed to build a container to run all scilus flows.
AlexVCaron/dmriqc_flow
A Nextflow pipeline for diffusion MRI quality check
AlexVCaron/dmriqcpy
Diffusion MRI Quality Check in python
AlexVCaron/dvc-data
DVC's data management subsystem
AlexVCaron/fury
FURY - Free Unified Rendering in pYthon.
AlexVCaron/mrHARDIflow
mrHARDI is an automated multi-resolution diffusion MRI processing pipeline implemented in Nextflow.
AlexVCaron/nextflow-website
Nextflow public web site
AlexVCaron/nf-core-modules
nf-scil modules repository
AlexVCaron/nf-core-tools
Python package with helper tools for the nf-core community.
AlexVCaron/nf-mri-modules
Repository storing Nextflow modules definitions for popular and state-of-the-art MRI processing technologies
AlexVCaron/nf-neuro
AlexVCaron/nf-scil
SCIL Nextflow Toolbox
AlexVCaron/nf-scil-fibercup
new repository for fiber cup
AlexVCaron/nf-tractoflow
AlexVCaron/nft-nifti
AlexVCaron/scil-documentation
Documentation for the SCIL
AlexVCaron/scilpy
The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
AlexVCaron/scilpy-requirements-frozen
AlexVCaron/scilpypi
Scilpy building and PyPI publishing tools
AlexVCaron/setup-nf-test
AlexVCaron/tractoflow
TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
AlexVCaron/versutils
AlexVCaron/vscode_extensions
AlexVCaron/website
Code and files for the main nf-core website.