scilus/scilpy

Issues

• Bug while using scripts for surface files operation

  #1013 opened 2 months ago by zhitao-guo
  1

• TODO: Harmonize `scil_labels_from_mask` and `scil_lesions_info`

  #1010 opened 2 months ago by AntoineTheb
  0

• noddi multithread

  #997 opened 2 months ago by arnaudbore
  0

• Some issues with dps and dpp

  #1008 opened 2 months ago by arnaudbore
  0

• scil_tractogram_filter_by_length save_rejected option does nothing

  #1007 opened 3 months ago by karanphil
  1

• add assert scripts output tractogram

  #995 opened 4 months ago by arnaudbore
  0

• Apply transform to hdf5 error when DPP are present

  #960 opened 6 months ago by frheault
  1

• scilpy v2.0

  #917 opened 5 months ago by AlexVCaron
  0

• Lost options for PTT tracking

  #952 opened 5 months ago by EmmaRenauld
  0

• Keyword-only arguments

  #975 opened 5 months ago by CHrlS98
  0

• scil_tractogram_uniformize_endpoints.py : Can not use target_roi with an atlas and a label.

  #962 opened 5 months ago by matthieudumont
  2

• [VIZ] Add support for peak coloring

  #970 opened 5 months ago by AlexVCaron
  0

• Load large fODF volumes using memmaps

  #957 opened 6 months ago by AlexVCaron
  0

• Uniformize help messages formatting

  #956 opened 6 months ago by AlexVCaron
  0

• Tractometry_flow fails if not enough streamlines

  #843 opened 9 months ago by arnaudbore
  1

• ToDo: change BoundingBox management in scil_crop_volume.

  #758 opened a year ago by EmmaRenauld
  4

• BUG : dvc cache partially used when packages are pulled

  #935 opened 6 months ago by AlexVCaron
  0

• Manage test data aside of git commits

  #794 opened 6 months ago by AlexVCaron
  1

• update help local and pft tracking

  #943 opened 6 months ago by arnaudbore
  1

• Image correlation correct?

  #940 opened 6 months ago by EmmaRenauld
  2

• BUG: `scil_tractogram_commit.py` crashes without a mask

  #932 opened 6 months ago by AntoineTheb
  2

• Add test single shell NODDI

  #941 opened 6 months ago by arnaudbore
  0

• NLmeans unclear!

  #939 opened 6 months ago by EmmaRenauld
  0

• codevov does not cov multithread processes

  #931 opened 6 months ago by arnaudbore
  2

• Warning for descoteaux basis

  #865 opened 6 months ago by EmmaRenauld
  2

• ToDo, manage differently b0_threshold and tolerance.

  #866 opened 6 months ago by EmmaRenauld
  0

• SFT's hidden `_data` should never be used.

  #891 opened 7 months ago by EmmaRenauld
  2

• plot residual in dti_metrics

  #922 opened 7 months ago by arnaudbore
  0

• ToDo: scil_dwi_detect_volume_outliers improvement

  #915 opened 7 months ago by EmmaRenauld
  0

• TODO Jan 2024

  #874 opened 7 months ago by arnaudbore
  1

• Refactor local tracking script after dipy 1.8.0

  #784 opened 7 months ago by gabknight
  0

• Check typo automatically

  #914 opened 7 months ago by arnaudbore
  0

• Speedup testing

  #910 opened 7 months ago by arnaudbore
  0

• Add GPU support for PFT tracking

  #901 opened 7 months ago by CHrlS98
  4

• Default logging level

  #879 opened 8 months ago by EmmaRenauld
  5

• Division by 0

  #884 opened 8 months ago by EmmaRenauld
  0

• scil_dwi_extract_b0 -f

  #859 opened 8 months ago by mdesco
  0

• scil_dwi_compute_snr

  #858 opened 8 months ago by mdesco
  0

• MSMT_frf and fODF inconsistency with --tolerance on b-values

  #830 opened 9 months ago by mdesco
  0

• [ENH] Add not legacy when install scilpy

  #809 opened 9 months ago by arnaudbore
  1

• --final_order not clear in new scil_gradients_modify_axes.py

  #816 opened 9 months ago by mdesco
  2

• compute_divide with --fa option

  #831 opened 9 months ago by mdesco
  0

• Speedup outlier removal

  #826 opened 9 months ago by arnaudbore
  0

• Bug in `uncompress` from `scilpy/tractograms/uncompress.pyx`

  #805 opened 10 months ago by AntoineTheb
  0

• Volume discrepancy between scilpy and tractometry_flow scripts

  #793 opened a year ago by cbedetti
  1

• Add pre-commit hooks to cleanup code

  #792 opened a year ago by AlexVCaron
  0

• Add data to unit test tractograms/streamlines

  #789 opened a year ago by arnaudbore
  0

• Fix Cythonization warnings

  #780 opened a year ago by AlexVCaron
  1

• [ENH] Add scilpy version in help

  #760 opened a year ago by arnaudbore
  0

• Missing documentation for scilpy.tractanalysis.grid_intersections

  #745 opened a year ago by CHrlS98
  1