simultaneous analysis of genomes and exomes

[MariaCartolano]

Hello,

I would like to analyze in the same batch WGS and WES data. Is it possible to do this using the SigProfilerExtractor?
How is exome normalisation performed?

Thank you in advance for your help.
Maria

[mishugeb]

Hi Maria,
Sorry for the delayed response as I did not get any notification of this issue in the repository.
If you use "exome=TRUE", that will analyze the WES data.
If you use "exome=FALSE", that will analyze the WGS data.

Thanks,
Mishu