mutation-analysis

There are 54 repositories under mutation-analysis topic.

  • infection/infection

    PHP Mutation Testing library

    Language:PHP2k35551155

  • hcoles/pitest

    State of the art mutation testing system for the JVM

    Language:Java1.6k57807349

  • humbug/humbug

    Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.

    Language:PHP1.1k5813473

  • mull-project/mull

    Practical mutation testing and fault injection for C and C++

    Language:C++7103026974

  • theofidry/awesome-mutation-testing

    Mutation testing resources: how to make better code by introducing bugs

    37031632

  • AlexandrovLab/SigProfilerExtractor

    SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

    Language:Python1462319851

  • STAMP-project/pitest-descartes

    Descartes supports developers to improve their test suites by reporting weak spots in covered code

    Language:Java1241412120

  • AlexandrovLab/SigProfilerMatrixGenerator

    SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

    Language:Python952512532

  • AlexandrovLab/SigProfilerPlotting

    SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

    Language:Python45141113

  • STAMP-project/pitmp-maven-plugin

    Maven plugin to handle multi module projects for PiTest

    Language:Java44164414

  • EngineeringSoftware/mcoq

    Mutation analysis tool for Coq verification projects

    Language:Java27941

  • thierry-tct/mart

    LLVM Mutation Artisan (MART) is a configurable mutation testing framework based on LLVM

    Language:C++25504

  • sualeh/introduction-to-mutation-testing

    Introduction to Mutation Testing

    Language:C#22415

  • AlexandrovLab/SigProfilerMatrixGeneratorR

    R wrapper for utilizing the SigProfilerMatrixGenerator framework

    Language:R201114

  • magsilva/proteum

    Tool for mutation testing of C programs

    Language:C194510

  • AlexandrovLab/SigProfilerExtractorR

    An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

    Language:R154122

  • AlexandrovLab/SigProfilerTopography

    SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.

    Language:Python151361

  • AlexandrovLab/SigProfilerPlottingR

    An R wrapper for running the SigProfilerPlotting framework

    Language:R10011

  • IbrahimTanyalcin/I-PV

    Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

    Language:HTML10302

  • AlexandrovLab/SigProfilerClusters

    Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.

    Language:Python91240

  • infection/homebrew-infection

    Homebrew tap for https://infection.github.io/

    Language:Ruby5513

  • Mashin6/detect-mutations

    Python script for detecting mutations in aligned reads (.bam |.sam) e.g. from RNA base conversion techniques such as TimeLapse, SLAM-seq, TUC-seq

    Language:Python5203

  • ojcharles/MutationFeatures

    Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)

    Language:Python5261

  • talalzone/DeepMutate

    A Language/Platform agnostic Mutation & Analysis Language.

    Language:Java5100

  • GZoltar/killmap

    Utility Java program to perform mutation-analysis

    Language:Java3211

  • haliliceylan/MUT4SLX

    The Simulink Model Mutation Testing project provides a framework for generating mutants, and CSV file as an output. It utilizes the MATLAB environment to load the model, apply mutations, and collect outputs.

    Language:HTML3101

  • infection/playground

    Infection Playground - online tool to try Infection right in your browser.

    Language:PHP3

  • ali-ghanbari/memu-demo

    Faster Mutation Analysis with MeMu

    Language:Java2000

  • datagone/vscode-stryker-mutator

    Unofficial VSCode extension of 'Stryker Mutator' for hunting mutants hiding in our codebase (currently, it supports .NET)

    Language:TypeScript2130

  • phantran/moco

    An efficient mutation testing tool written in Kotlin for Java Maven projects

    Language:Kotlin2241

  • reimandlab/needleplot

    Another needleplot for mutation data, used by ActiveDriverDB

    Language:JavaScript2300

  • seer-lab/MutationScorePredictor

    A project that will predict the mutation score of methods and classes using a support vector machine and source code metrics

    Language:Ruby23110

  • christoffer-nylen/dexcov

    Generates a Dextool Mutate vs LCOV side by side presentation

    Language:HTML1100

  • gorkemkose/ENS210_Computational_Biology_Project

    Term project for the Computational Biology (ENS210) course in Sabancı University.

    Language:Python1100

  • ninadakolekar/KRAS-Mutation-Detection

    Mutation Detection in Lung Cancer Cell Lines using CNNs

    Language:Python1100

  • paulashford/funvar-tracerx

    Collated scripts for FunVar-TRACERx gene duplication, diversity and neofun.

    Language:R1