AlexandrovLab/SigProfilerClusters

Issues

• Error: There are no simulated data present for this project

  #27 opened 2 months ago by mkazanov
  21

• Error: There are no simulated data present for this project #27

  #29 opened 2 months ago by mkazanov
  0

• plot rainfall error

  #25 opened 5 months ago by temizna
  21

• Error: There are no simulated data present for this project.

  #6 opened 3 years ago by lincj1994
  2

• Installation problem

  #24 opened 5 months ago by mkazanov
  5

• Error with running SigProfilerClusters after SigProfilerSimulator

  #22 opened 7 months ago by kbrar4013
  8

• Errors during multiprocessing

  #23 opened 9 months ago by MousumyCSE
  1

• AttributeError: 'numpy.int64' object has no attribute 'bit_length'

  #20 opened a year ago by cmills2
  1

• Install issue

  #21 opened a year ago by cutleraging
  2

• Exome argument missing from the wiki documentation

  #16 opened a year ago by MikeACG
  3

• 'SigProfilerMatrixGenerator.scripts.SigProfilerMatrixGeneratorFunc' has no attribute 'reference_paths'

  #19 opened a year ago by christianbosselmann
  1

• how could the IMD cutoff be evaluated as value 1

  #18 opened a year ago by phoebe-xin-leung
  2

• Unable to cluster mutations

  #17 opened a year ago by aliahhawari
  6

• issue with using CCFs

  #15 opened a year ago by timchu90
  6

• Is txt input eligible?

  #11 opened 2 years ago by zyh4482
  9

• UnboundLocalError: local variable 'matrix_file_suffix' referenced before assignment

  #14 opened 2 years ago by fonetto
  2

• How to tell the Clusters to use the VAF in MAF input?

  #13 opened 3 years ago by lincj1994
  1

• rainfallPlots is missing.

  #12 opened 3 years ago by xysj1989
  4

• Problem with MNV records in Mutect2 VCFs

  #10 opened 3 years ago by eallen-bbi
  3

• Program always exits with no logging or error message

  #8 opened 3 years ago by eallen-bbi
  3

• FileNotFoundError: [Errno 2] No such file or directory: './Allen_Pat02_ID/output/vcf_files_corrected/cancer_clustered/INDEL/output/ID/cancer_clustered.ID83.all'

  #9 opened 3 years ago by shishuo16
  6

• No such file or directory: '.output/simulations/data/imds.pickle'

  #7 opened 3 years ago by lincj1994
  1

• RuntimeError: process associated

  #5 opened 3 years ago by shishuo16
  2

• How to set parameters to run SigProfilerClusters for INDEL?

  #3 opened 3 years ago by YingYa
  5

• column to extract VAF when standardVC

  #4 opened 3 years ago by ksoyeona
  1

• imds_corrected when correction=True and chrom_based=True

  #2 opened 3 years ago by ksoyeona
  1

• some issues when running SigProfilerClusters?

  #1 opened 3 years ago by YingYa
  1