AlexandrovLab/SigProfilerExtractor

Issues

• Previously reported issue with PdfMerger

  #262 opened 2 months ago by syparkmd
  0

• Unexpected COSMIC Signatures in Breast Cancer Samples (SBS10d and SBS22b)

  #261 opened 2 months ago by hilmklnc
  0

• How to Access COSMIC Signature Decomposition in Individual Solutions

  #260 opened 2 months ago by hilmklnc
  4

• Issue with PdfMerger

  #259 opened 3 months ago by yingqizhang
  3

• Running tool with custom CNV calls

  #252 opened 6 months ago by kbrar4013
  5

• support MAF files?

  #258 opened 4 months ago by wangzunq
  3

• alexandrov ftp site is currently available?

  #257 opened 5 months ago by a00101
  2

• cannot reindex on an axis with duplicate labels

  #256 opened 5 months ago by jasmin774
  5

• Use of deprecated pandas

  #255 opened 5 months ago by simonjuleseric2
  1

• Changelog

  #246 opened 5 months ago by IanVermes
  1

• numpy version error expected np.ndarray (got numpy.ndarray)

  #254 opened 5 months ago by ahgillmo
  4

• Error while running the tool

  #251 opened 5 months ago by itigupta2429
  1

• Could not read from remote repository.

  #253 opened 6 months ago by Ryia-Illani
  1

• Max iterations always runs independent of NMF tolerance and precision

  #250 opened 6 months ago by ebergstr
  1

• Should the copy number segments be filtered before COPY NUMBER MATRIX GENERATION?

  #249 opened 7 months ago by YingYa
  1

• Singularity container creation

  #233 opened a year ago by Katerina10-cloud
  5

• CPU usage and GPU usage too little

  #244 opened 7 months ago by xiaoyaojianghuzai
  14

• user defined H_initials and W_initials

  #248 opened 8 months ago by MariaCartolano
  2

• Decomposing De Novo Signatures

  #247 opened 8 months ago by ywhnet
  2

• CPU usage and GPU usage too little, and parameters don't take effect

  #243 opened 8 months ago by xiaoyaojianghuzai
  1

• New issue with Indels

  #236 opened 9 months ago by gafishbein
  7

• AttributeError: 'NoneType' object has no attribute 'keys'

  #240 opened 9 months ago by jennyp76
  3

• index error may be caused by non-standard fields or variant type

  #242 opened 9 months ago by xiaoyaojianghuzai
  1

• IndexError occurred when processing directory /app/output: index out of range

  #239 opened 9 months ago by xiaoyaojianghuzai
  4

• "Cannot reindex on an axis with duplicate labels"-Error

  #241 opened 9 months ago by MolPath-Bioinfo
  1

• sigProfilerExtractor for ID(INDELS)

  #237 opened 9 months ago by shanimalik86
  5

• The difference between SBS96_De-Novo_Solution and COSMIC_SBS96_Decomposed_Solution.

  #238 opened 9 months ago by shenhaizhongdechanrao
  3

• Asking for SBS96 contexts in SigProfilerExtractor but receiving CH1000

  #235 opened 10 months ago by emilysouthworth
  1

• Denovo Signature and Assigning Signature Matching Error

  #234 opened a year ago by KANGseungseok
  1

• question about the SigProfilerExtractor

  #232 opened a year ago by nan5895
  1

• Sample filtering before extraction

  #231 opened a year ago by thisisliuyu
  1

• ValueError: operands could not be broadcast together with shapes (83,0) (0,0)

  #230 opened a year ago by dineshpeace
  3

• Infinite loop

  #228 opened a year ago by SukanyaPanja
  1

• Custom opportunities matrix

  #225 opened a year ago by gevro
  8

• Issue with install

  #229 opened a year ago by cutleraging
  2

• AttributeError: 'NoneType' object has no attribute 'keys (decomposition.py error)

  #227 opened a year ago by nan5895
  2

• Minimum number of mutations or genome length.

  #224 opened a year ago by shenhaizhongdechanrao
  1

• SBS384 extraction problem

  #221 opened a year ago by frvirard
  5

• Inquiry Regarding sigProfilerExtractor Resource Requirements

  #219 opened a year ago by ShinXeno
  1

• error because of new pandas version

  #223 opened a year ago by sainadfensi
  1

• Strategies to improve cosine similarity per sample

  #222 opened a year ago by sainadfensi
  1

• interpretation for SBS 96D

  #220 opened a year ago by sainadfensi
  5

• Signature plots not being plotted for 4608 context extractions

  #217 opened a year ago by jnau
  0

• calculate cosine similarity

  #216 opened a year ago by me-nobody
  1

• Cosine similarity for each COSMIC signature

  #215 opened a year ago by nash5202
  1

• install own copy of genome

  #213 opened a year ago by me-nobody
  1

• [Errno 2] No such file or directory

  #214 opened a year ago by KANGseungseok
  3

• Alexandrov FTP server not responding

  #212 opened 2 years ago by daanhazelaar
  0

• UnicodeEncodeError: 'latin-1' codec can't encode characters in position 1-40: ordinal not in range(256)

  #211 opened 2 years ago by anderdnavarro
  5

• number of signatures in solution

  #210 opened 2 years ago by bakeronit
  2