itigupta2429

Pinned Repositories

• SigProfilerExtractor

  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

  Language:Python1562121754

• ecotyper

  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

  Language:R19739942

• CONIPHER

  Git repo for CONIPHER tree building

  Language:R182134

• pairtree

  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

  Language:Python3744210

• MuSiCal

  A comprehensive toolkit for mutational signature analysis

  Language:Python353355

itigupta2429's Repositories