parklab/MuSiCal

Issues

• TypeError: _nnls.nnls() missing required argument 'n' (pos 3)

  #80 opened 2 days ago by andreyurch
  0

• Run MuSical refitting step sing customized set of signatures

  #79 opened 13 days ago by itigupta2429
  1

• [catalog] Updates on the COSMIC signatures - ValueError

  #78 opened a month ago by jinhys
  3

• Rstudio Version request

  #67 opened 4 months ago by Glies2
  1

• Cohort Stratification Error

  #76 opened 4 months ago by jfajn
  2

• De novo signature discovery - very slow

  #74 opened 6 months ago by maia-munteanu
  2

• Refitting example

  #73 opened 7 months ago by mandronescu
  5

• Cannot load catalogs

  #71 opened 7 months ago by dspagnolo09
  2

• Small bug in remove_samples_based_on_gini?

  #62 opened 2 years ago by ampregnall
  2

• Challenges with Model Validation

  #61 opened 2 years ago by laurelhiatt
  9

• ModuleNotFoundError: No module named 'musical.denovo'

  #60 opened 2 years ago by JoseFrancoAlvarez
  1

• Improve matching and refitting for samples with large errors

  #40 opened 2 years ago by Hu-JIN
  0

• Update the default of load_catalog()

  #39 opened 2 years ago by Hu-JIN
  0

• Improve the structure of DenovoSig

  #38 opened 2 years ago by Hu-JIN
  0

• Improve fcluster or cut_tree in hierarchical clustering

  #37 opened 2 years ago by Hu-JIN
  0

• Update mannwhitneyu such that it does not throw an error when the two arrays are identical and contains a single value

  #36 opened 2 years ago by Hu-JIN
  0

• Output of beta_divergence when beta = 1 can be negative sometimes

  #35 opened 2 years ago by Hu-JIN
  0

• Add a comment on n_replicates

  #34 opened 2 years ago by Hu-JIN
  0

• Inconsistency of using KL divergence with NNLS

  #33 opened 2 years ago by Hu-JIN
  1

• Keep track of sample names

  #31 opened 2 years ago by Hu-JIN
  0

• Improve the automatic selection of n_components

  #18 opened 2 years ago by Hu-JIN
  1

• Cythonize core algorithms

  #12 opened 2 years ago by Hu-JIN
  0

• Improve parallelization of DenovoSig

  #7 opened 2 years ago by Hu-JIN
  0

• Make sure everything works for n_components = 1

  #32 opened 3 years ago by Hu-JIN
  1

• Update simulate_count_matrix using np.random.multinomial

  #30 opened 3 years ago by Hu-JIN
  1

• Use differential_tail_test() in selecting n_components

  #24 opened 3 years ago by Hu-JIN
  3

• Use rank deficiency to select n_components for mvNMF

  #20 opened 3 years ago by Hu-JIN
  1

• Corner cases for sil_score calculation in _gather_results()

  #19 opened 3 years ago by Hu-JIN
  1

• Check silhouette score definition for corner cases

  #25 opened 3 years ago by Hu-JIN
  1

• Output a warning when the selected lambda_tilde is at the edge of the grid

  #23 opened 3 years ago by Hu-JIN
  1

• Normalize W at the end of NMF

  #21 opened 3 years ago by Hu-JIN
  1