Pinned Repositories
bicg_scwgs
EBI_cancer_workshop_CNV
hands-on for NGS/SNParray CNV call trainning
hatchet
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
linkedread_barcode
Generate linked read information
phylogenetic-analysis
Phylogenetic validation
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
VariantCalling
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
CAN_2021
Cancer Analysis workshop 2021
BiCG_2019
Workshop content for Bioinformatics for Cancer Genomics workshop 2019
ahgillmo's Repositories
ahgillmo/phylogenetic-analysis
Phylogenetic validation
ahgillmo/bicg_scwgs
ahgillmo/EBI_cancer_workshop_CNV
hands-on for NGS/SNParray CNV call trainning
ahgillmo/hatchet
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
ahgillmo/linkedread_barcode
Generate linked read information
ahgillmo/TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
ahgillmo/VariantCalling