Pinned Repositories
bioinfo_tools_in_the_wild
A living list of bioinformatics & computational biology tools with examples of papers that used the tools
databases
Workflows and input data for the construction of the standard MICOM model databases.
LatchBio-Automated-SCFiltering
LatchBio Implementation of Dropkick for automated single cell filtering
Malaria-classifier
CNN built in Python using Keras to classify parasitised malaria cells
micom_paper_code
Micom paper code - figuring out functionality and visualisations for DPhil thesis
Mining-for-microbes
Reusing publicly available whole transcriptome data to determine the state of the microbiome at time of sampling.
MuSiC_Julia
Rosalind-Problems
My attempts at the Rosalind problems on rosalind.info
stave
Bulk to Single Cell Type Estimation
useful-bioinf-functions
Quality of life functions that make bioinformatics + computational biology analyses easier
Amit-H's Repositories
Amit-H/LatchBio-Automated-SCFiltering
LatchBio Implementation of Dropkick for automated single cell filtering
Amit-H/Mining-for-microbes
Reusing publicly available whole transcriptome data to determine the state of the microbiome at time of sampling.
Amit-H/useful-bioinf-functions
Quality of life functions that make bioinformatics + computational biology analyses easier
Amit-H/bioinfo_tools_in_the_wild
A living list of bioinformatics & computational biology tools with examples of papers that used the tools
Amit-H/gtex-transcriptome-modelling
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
Amit-H/Malaria-classifier
CNN built in Python using Keras to classify parasitised malaria cells
Amit-H/micom_paper_code
Micom paper code - figuring out functionality and visualisations for DPhil thesis
Amit-H/MuSiC_Julia
Amit-H/Rosalind-Problems
My attempts at the Rosalind problems on rosalind.info
Amit-H/stave
Bulk to Single Cell Type Estimation