Pinned Repositories
AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
bio3d
A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d
DDGScan
Scripts and facilities for in-silico mutagenesis with FoldX, Rosetta and ABAUCS1/2
DeepAlign
DeepAlign: the protein structure analysis toolkit
DepictStructBioinf
A tool for investigating labeled residues in homologous 3D protein strctures. Pre-loaded with APOBEC family information.
gitbook-hongloumeng
《红楼梦》电子书
openbabel.github.io
The Open Babel website https://openbabel.org
ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
snakemake-cartesian-ddg
Snakemake pipeline for Rosetta 'cartesian-ddg' protocol for protein stability prediction upon mutations.
AmyCuiLi's Repositories
AmyCuiLi/DepictStructBioinf
A tool for investigating labeled residues in homologous 3D protein strctures. Pre-loaded with APOBEC family information.
AmyCuiLi/AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
AmyCuiLi/bio3d
A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d
AmyCuiLi/DDGScan
Scripts and facilities for in-silico mutagenesis with FoldX, Rosetta and ABAUCS1/2
AmyCuiLi/DeepAlign
DeepAlign: the protein structure analysis toolkit
AmyCuiLi/gitbook-hongloumeng
《红楼梦》电子书
AmyCuiLi/openbabel.github.io
The Open Babel website https://openbabel.org
AmyCuiLi/ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
AmyCuiLi/snakemake-cartesian-ddg
Snakemake pipeline for Rosetta 'cartesian-ddg' protocol for protein stability prediction upon mutations.