AnacletoLab
Computational Biology and Bioinformatics Lab - Dept. of Computer Science - UNIMI
Milano, Italy
Pinned Repositories
DataAnalysisR
A tool for statistical analysis, imputation via missForest, identification of most important variables
ensmallen
🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.
epigenomic_dataset
Python package wrapping ENCODE epigenomic data for a number of reference cell lines.
grape
🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations
miRInter-Trans
A transformer-based model to predict micro RNA interactions
ncRNA-CUPID
ncRNA-CUPID, Computational Understanding of Pairwise Interactions in ncRNA Data (matchmaking for ncRNAs)
parSMURF
High Performance Computing imbalance-aware machine learning tool for the genome-wide detection of pathogenic variants
RNA-KG
Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.
RNA-KG_homogeneous_emb_analysis
sHAM
Compact representations of convolutional neural networks via weight pruning and quantization
AnacletoLab's Repositories
AnacletoLAB/grape
🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations
AnacletoLAB/ensmallen
🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.
AnacletoLAB/RNA-KG
Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.
AnacletoLAB/sHAM
Compact representations of convolutional neural networks via weight pruning and quantization
AnacletoLAB/parSMURF
High Performance Computing imbalance-aware machine learning tool for the genome-wide detection of pathogenic variants
AnacletoLAB/epigenomic_dataset
Python package wrapping ENCODE epigenomic data for a number of reference cell lines.
AnacletoLAB/DataAnalysisR
A tool for statistical analysis, imputation via missForest, identification of most important variables
AnacletoLAB/RNA-KG_homogeneous_emb_analysis
AnacletoLAB/grape.github.io
Repository for the GraPE project website.
AnacletoLAB/meta_models
Python package with common meta-models building blocks.
AnacletoLAB/miRInter-Trans
A transformer-based model to predict micro RNA interactions
AnacletoLAB/ncRNA-CUPID
ncRNA-CUPID, Computational Understanding of Pairwise Interactions in ncRNA Data (matchmaking for ncRNAs)
AnacletoLAB/crr_prediction
Prediction of activation of cis-regulatory regions.
AnacletoLAB/DR_omics_integration
code and material to run all the experiments for dimensionality reduction guided by block analysis, data integration, OS prediction
AnacletoLAB/Finenzyme
Language modeling for enzyme sequences
AnacletoLAB/godata-pipe
a pipeline to build datasets for GO terms prediction
AnacletoLAB/hemdag
an R package implementing several Hierarchical Ensemble Methods for graphs
AnacletoLAB/MicroscopyImageAnalysis
Published code for immunohistochemical image segmentation and co-occurrence analysis
AnacletoLAB/ParCOSNet
AnacletoLAB/schemalink-docs
Source code for the documentation website of the Schemalink project
AnacletoLAB/clusterv
The clusterv R package implements a set of functions to assess the reliability of clusters discovered by clustering algorithms.
AnacletoLAB/grape_helper_lib
Collection of function to improve GRAPE functionality
AnacletoLAB/hetnode2vec_ensmallen
This repository provides an implementation to add Het-node2vec as a library to Grape.
AnacletoLAB/missSNF
R implementation of the miss-SNF algorithm.
AnacletoLAB/mosclust
Stability based methods for model order selection in clustering problems.
AnacletoLAB/obogaf-parser
a perl5 module to handle obo and gaf file
AnacletoLAB/parSMURF-NG