/crr_prediction

Prediction of activation of cis-regulatory regions.

Primary LanguageJupyter Notebook

crr_prediction

Python software library implementing meta models of Bayesian Feed Forward Neural Networks (Bayesian-FFNN) and Bayesian Convolutional Neural Networks (Bayesian-CNN) that use Bayesian optimization techniques for automatic neural model selection. The repository includes also experiments for the detection of active cis-regulatory regions, i.e. promoters and enhancers, in specific cell lines.

Notes on installing Ray

We need the very latest version of ray, that can be currently installed from the tutorial available here.

You can identify your python version by running python -V.

If you get errors such as the wheel is not supported just update your pip installation by using:

pip install pip -U