Andersen Lab

Johns Hopkins University

United States of America

Pinned Repositories

CAENDR
Language:HTML4 5 33
cegwas2-nf
GWA mapping with C. elegans
Language:R8 9 106
CellProfiler
CellProfiler Image Analysis Tools
Language:Shell3 8 20
CeNDR
Language:HTML5 9 846
dry-guide
The Guide to Computing in the Andersen Lab
4 11 27
Genetic-Analysis
8 12 02
IBiS-Bootcamp
Language:Shell40 10 02
liftover-utils
Utilities for lifting over genome coordinates in C. elegans
Language:Perl6 11 42
pyPipeline
Andersen Lab Python-based pipeline for variant calling.
Language:Python6 15 01
VCF-kit
VCF-kit: Assorted utilities for the variant call format
Language:Python122 18 4625

Andersen Lab's Repositories

AndersenLab/liftover-utils
Utilities for lifting over genome coordinates in C. elegans
Language:Perl6 11 42
AndersenLab/pyPipeline
Andersen Lab Python-based pipeline for variant calling.
Language:Python6 15 01
AndersenLab/Andersen-Knowledge-Base
11
AndersenLab/CrossSim
Some python classes for simulating genetic crosses
Language:Python1 5 02
AndersenLab/mmp-telseq
Code for analyzing telomere length from million mutations project using telseq
Language:Python1 11 0
AndersenLab/wormbase-api
Language:R11
AndersenLab/andersen-CRISPR
Utilities/tools for genome-editing
Language:Python12 01
AndersenLab/Andersen-Lab-Code
Andersen Lab Summer Work Code
Language:Python11 0
AndersenLab/andersen-pipeline
Variant calling/annotation pipeline to be published
Language:Python1
AndersenLab/Andersen_etal_2015G3
Data and code for 2015 Andersen et al. G3 paper
Language:HTML1
AndersenLab/annotation
Tools for annotating variant data
11 01
AndersenLab/cluster-scripts
Scripts for use on clusters
Language:Shell10 01
AndersenLab/CodeClub
All code/hints/tips/cheat sheets from code club meetings
Language:HTML2
AndersenLab/COPASutils-data
Example data for the COPASutils R package
10 01
AndersenLab/datasets
Datasets and in some cases, the scripts used to generate them.
Language:Python10 02
AndersenLab/DilutionsCalculator
Contains Dilutions Calculator R script and R markdown files
13 0
AndersenLab/Dose-Heritability
Language:HTML1
AndersenLab/Dose-Response
Language:HTML14 01
AndersenLab/Longevity
Language:HTML14 01
AndersenLab/mmp-vcf
Tools for generating vcf files from mmp data and working with.
Language:Shell11 01
AndersenLab/N2xCB4856-RIAILS
1
AndersenLab/Rad-Seq
1
AndersenLab/Report1
Andersen Lab - transforming phenotype data
12 0
AndersenLab/Report2
Andersen lab - linkage mapping
Language:R
AndersenLab/SorterDataAssembly
Reporting and assembly of master data frame from raw sorter data
Language:R12 101
AndersenLab/variant-caller-analysis
Code for running variant callers and simulations
Language:Python1
AndersenLab/Variant-Caller-Pipeline
Language:Shell1
AndersenLab/vcfR
Query VCFs in R!
Language:R1
AndersenLab/wild_isolates
Data for global C. elegans wild isolate collection
Language:R