Pinned Repositories
genbank_to_kallisto.py
Script for converting a genbank file to a fasta file and a tsv file, for use in kallisto
gess
A tool to estimate genome size from fastq reads; python wrapper for KMC
indoor-plants
Script for chloroplast genome assembly
large-genome-assembly
organelle-assembly
super-phosphate
Script for assembling a mitochondrial genome
workflow-denovo-stacks
workflow-partial-bwa-mem
bionitio
Demonstrating best practices for bioinformatics command line tools
training
Training materials and links for plant genomics
AnnaSyme's Repositories
AnnaSyme/organelle-assembly
AnnaSyme/indoor-plants
Script for chloroplast genome assembly
AnnaSyme/large-genome-assembly
AnnaSyme/workflow-denovo-stacks
AnnaSyme/workflow-partial-bwa-mem
AnnaSyme/workflow-partial-cstacks-sstacks-gstacks
AnnaSyme/workflow-partial-gstacks-populations
AnnaSyme/workflow-partial-ustacks-only
AnnaSyme/workflow-qc-of-radseq-reads
AnnaSyme/workflow-ref-guided-stacks
AnnaSyme/super-phosphate
Script for assembling a mitochondrial genome
AnnaSyme/bacass
Simple bacterial assembly and annotation pipeline
AnnaSyme/biodemo
AnnaSyme/biodemo2
AnnaSyme/galaxy-hub
Galaxy Community Hub
AnnaSyme/galaxy-media-site
A content site for a Galaxy instance, built with Django
AnnaSyme/galaxy_codex
Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)
AnnaSyme/Genome-assessment-post-assembly
AnnaSyme/how-to-guides
This site presents How-to-Guides and other associated documentation that supports the reuse of bioinformatics tools, workflows and data on Australian compute systems and infrastructure.
AnnaSyme/iwc
Intergalactic Workflow Commission
AnnaSyme/LGtutorial
markdown version
AnnaSyme/markdown-testing
AnnaSyme/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
AnnaSyme/nextflow-aws-testing
test workflow to learn stuff
AnnaSyme/rnaseq-nf
A proof of concept of RNAseq pipeline
AnnaSyme/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
AnnaSyme/training
Training materials and links for plant genomics
AnnaSyme/training-material
A collection of Galaxy-related training material
AnnaSyme/wfs-GA
AnnaSyme/wfs-VGP