Arkanosis/bamrescue

Issues

• Feature: In "check" mode, set the unix return code to something aside from "0" if corrupted blocks/issues are found.

  #137 opened 7 months ago by alanhoyle
  1

• Packaging

  #10 opened 7 years ago by Arkanosis
  0

• Provide a package for Conda

  #136 opened 7 months ago by Arkanosis
  0

• Detailed statistics to be used for optional repair

  #5 opened 7 years ago by Arkanosis
  0

• Web page

  #11 opened 7 years ago by Arkanosis
  4

• Test pre-built packages

  #15 opened 6 years ago by Arkanosis
  0

• Make “help” and “version” commands instead of options

  #17 opened 6 years ago by Arkanosis
  0

• Make panics human-friendly

  #19 opened 6 years ago by Arkanosis
  0

• Provide a flatpak

  #18 opened 6 years ago by Arkanosis
  0

• Program documentation

  #9 opened 6 years ago by Arkanosis
  1

• Investigate faster inflate implementations

  #14 opened 7 years ago by Arkanosis
  1

• Shell autocompletion

  #16 opened 6 years ago by Arkanosis
  0

• Statistics about data corruption

  #12 opened 7 years ago by Arkanosis
  0

• Show a progress indicator

  #7 opened 7 years ago by Arkanosis
  0

• Rescue corrupted bam files

  #3 opened 7 years ago by Arkanosis
  1

• Advanced rescue of correctable corruptions

  #13 opened 7 years ago by Arkanosis
  0

• Handle corruptions in gzip / bgzf headers

  #2 opened 7 years ago by Arkanosis
  0

• Parallel check

  #1 opened 7 years ago by Arkanosis
  0

• Library documentation

  #8 opened 7 years ago by Arkanosis
  0

• Statistics in terms of reads instead of blocks / bytes

  #6 opened 7 years ago by Arkanosis
  0

• Accept .bai files as additional input to improve chances of success

  #4 opened 7 years ago by Arkanosis
  0