Pinned Repositories
asp-syntax-highlight
Visual Studio Code syntax highlighting for Answer Set Programming
circos-singularity
Singularity recipe for Circos.
ecmapper
Test to map EC number to BIGG and ModelSEED reactions.
gff_to_gbk
Convert GFF, fastas, annotation table and species name into Genbank.
kegg2bipartitegraph
Reconstruct metabolic graphs using KEGG database.
aucome
Automatic Comparison of Metabolism
esmecata
From taxonomic affiliations to annotated proteins using UniProt database.
metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
mpwt
Pathway Tools multiprocessing wrapper (for PathoLogic).
pathmodel
Prototype to infer new biochemical reactions and new metabolite structures to investigate metabolic pathway drift.
ArnaudBelcour's Repositories
ArnaudBelcour/asp-syntax-highlight
Visual Studio Code syntax highlighting for Answer Set Programming
ArnaudBelcour/gff_to_gbk
Convert GFF, fastas, annotation table and species name into Genbank.
ArnaudBelcour/circos-singularity
Singularity recipe for Circos.
ArnaudBelcour/ecmapper
Test to map EC number to BIGG and ModelSEED reactions.
ArnaudBelcour/kegg2bipartitegraph
Reconstruct metabolic graphs using KEGG database.
ArnaudBelcour/Workflow_GeneList_Analysis
Analysis of genes list. Not working!
ArnaudBelcour/ArnaudBelcour
ArnaudBelcour/bacdive-api
ArnaudBelcour/bioservices
Access to Biological Web Services from Python.
ArnaudBelcour/blog
Personal website (WIP).
ArnaudBelcour/bubble-tools
python routines related to bubble format
ArnaudBelcour/carveme_singularity
SIngularity image definition to install Cplex and Carveme in a container (e.g. for using the software on a cluster)
ArnaudBelcour/clyngor
Handy python wrapper around Potassco's Clingo ASP solver.
ArnaudBelcour/deepec-singularity
Singularity recipe for DeepEC.
ArnaudBelcour/docker-clingo
Dockerfile for Clingo with Python3.5 and Lua5.3.
ArnaudBelcour/gapseq
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
ArnaudBelcour/goSTAG-for-more-species
Python and R scripts to use goSTAG on exotic species.
ArnaudBelcour/MeneTools
MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.
ArnaudBelcour/metage2metabo-metacom_singularity
Singularity recipe for Metage2Metabo metacom.
ArnaudBelcour/Noun-Verb_Relations
Noun/Verb couple extraction (project for Text Mining and Analytics course).
ArnaudBelcour/pbsea
Deprecated, use Pingouin instead.
ArnaudBelcour/phylogeny-singularity
Singularity recipe for some phylogeny tools.
ArnaudBelcour/Python_Modules_Installation
A module to install automatically a python module.
ArnaudBelcour/radarboxplot-python
ArnaudBelcour/rhea_mapper
[Not maintained and not updated] Draft metabolic network reconstruction using Rhea database, Uniprot and SPARQL queries.
ArnaudBelcour/singularity_ubcg
Singularity recipe for UBCG Bacterial Core Genes
ArnaudBelcour/test_method
Repository containing test for some methods.