Issues
- 3
/mpwt/pwt_wrapper.py: ['Error', 'fatal error', 'No protein-coding genes with sequence data found.', 'Cannot continue.']
#88 opened by Alexander20mc - 3
I have created dozens of genome files and this situation has occurred. How can I solve it.
#87 opened by ChenCongZ - 4
- 23
- 2
Error when launching mpwt
#84 opened by lcottret - 2
When I use pathway tools to build models, this problem always appears: Fatal error: The search using the name of your rganism ("Caloramator Bacteria, Firmicutes, Clostridia, Clostridiales, Caloramator." strain=NIL) failed to find any Taxon class for your organism or returned ambiguous results.
#86 opened by ChenCongZ - 1
- 1
- 1
- 3
Issue mpwt delete and ptools cache ?
#81 opened by lcottret - 0
- 1
Issue mpwt with the --hf option
#73 opened by Kisekya - 2
Make each run of Pathway Tools independent.
#68 opened by ArnaudBelcour - 2
Issue with Pathway Tools 25.5 when checking log
#71 opened by DafniGi - 2
String not Boolean and path incorrect
#70 opened by AsaLap - 1
- 1
- 1
- 1
- 1
- 2
- 1
Refactor how paths are handled.
#60 opened by ArnaudBelcour - 1
Add __version__ to mpwt.
#59 opened by ArnaudBelcour - 1
- 1
- 1
Replace Pool map by starmap.
#51 opened by ArnaudBelcour - 1
- 1
- 1
- 4
Add gbk2pf converter.
#30 opened by ArnaudBelcour - 1
- 1
Add support for .fsa extension.
#47 opened by ArnaudBelcour - 1
--md should not be used without -o
#46 opened by ArnaudBelcour - 1
Add a --version option to mpwt
#44 opened by cfrioux - 0
Add a license to the project
#45 opened by cfrioux - 2
- 1
- 1
- 1
Add support to gbff.
#39 opened by ArnaudBelcour - 0
Issue when checking input files.
#37 opened by ArnaudBelcour - 4
Manage issue with PubMed citations.
#34 opened by ArnaudBelcour - 1
- 1
Add an option to create taxon_id.tsv.
#35 opened by ArnaudBelcour - 4
- 1
Add more informations in taxon_id.tsv.
#28 opened by ArnaudBelcour - 2
- 1
Split multipwt.py into multiple scripts.
#25 opened by ArnaudBelcour - 2
- 3
Add a better error if Pathway Tools failed.
#21 opened by ArnaudBelcour - 1