Pinned Repositories
aucome
Automatic Comparison of Metabolism
aureme_docker
emapper2gbk
Convert GFF, fastas, annotation table and species name into Genbank.
esmecata
From taxonomic affiliations to annotated proteins using UniProt database.
metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
mpwt
Pathway Tools multiprocessing wrapper (for PathoLogic).
mpwt-docker
A dockerfile for multiprocessing Pathway-Tools.
Ontosunburst
Sunburst representation of ontologies
padmet
Python library for hAndling metaData of METabolism.
padmet-utils
AuReMe's Repositories
AuReMe/metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
AuReMe/mpwt
Pathway Tools multiprocessing wrapper (for PathoLogic).
AuReMe/emapper2gbk
Convert GFF, fastas, annotation table and species name into Genbank.
AuReMe/aucome
Automatic Comparison of Metabolism
AuReMe/padmet
Python library for hAndling metaData of METabolism.
AuReMe/esmecata
From taxonomic affiliations to annotated proteins using UniProt database.
AuReMe/mpwt-docker
A dockerfile for multiprocessing Pathway-Tools.
AuReMe/aureme_docker
AuReMe/Ontosunburst
Sunburst representation of ontologies
AuReMe/padmet-utils
AuReMe/wiki-metabolic-network
AuReMe/aureme
AuReMe/HoloInteract
Study interactions hosts and microorganisms at metabolic level.
AuReMe/aucomana
AuReMe/MeneVal
AuReMe/mpwt-singularity
Singularity recipe for Pathway-Tools and mpwt.
AuReMe/prolipipe
The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites