AuReMe/aucomana

Aucomana (AuCoMe Analysis)

Library to make analyse of AuCoMe tool results

AuCoMe tool : https://github.com/AuReMe/aucome Workflow to reconstruct multiple metabolic networks in order to compare them.

Installation

Dependencies

For aucomana.utils :

Python packages installed :

• pandas>=1.4.2

For all aucomana :

Tools needed :

• R.

From cloned directory :

pip install -r requirements.txt

python install_R_packages.py

Python Packages needed :

• biopython>=1.79
• matplotlib>=3.5.1
• numpy>=1.22.3
• pandas>=1.4.2
• pyahocorasick>=1.4.4
• rpy2>=3.5.1
• venn>=0.1.3

R Packages installed :

• dendextend
• pvclust
• grDevices
• ape

Usage