/roughly

Smith-Waterman in Rust

Primary LanguageRust

Example Smith-Waterman in Rust-lang

Implementation of the Smith-Waterman DNA alignment algorithm, for learning purposes.

Usage

Takes a FASTA formatted file with a pair of sequences and aligns them. Pretty-prints the output to stdout.

$ cargo build
$ cargo run -- -h  # see help

# run aligner
$ cargo run -- -f examples/wiki-align.fa