Pinned Repositories
cPecan-signal
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program adapted to align signal-level information from ONT MinION
CytosineMethylationAnalysis
Scripts and ipython notebooks for reproducing results from "Cytosine Methylation Variation Calling with MinION Nanopore Sequencing"
HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
kafka-actix-example
Classic wordcount, updated with async/await!
PoaGo
PO-MSA in #golang
R3N
Recurrent neural network for nanopores
signalAlign
HMM-HDP models for MinION signal alignments
signalAlign_notebook
Notes and scripts for signalAlign
SVM
SVM analysis of nanopore signal
modkit
A bioinformatics tool for working with modified bases
ArtRand's Repositories
ArtRand/signalAlign
HMM-HDP models for MinION signal alignments
ArtRand/kafka-actix-example
Classic wordcount, updated with async/await!
ArtRand/CytosineMethylationAnalysis
Scripts and ipython notebooks for reproducing results from "Cytosine Methylation Variation Calling with MinION Nanopore Sequencing"
ArtRand/signalAlign_notebook
Notes and scripts for signalAlign
ArtRand/HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
ArtRand/cPecan-signal
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program adapted to align signal-level information from ONT MinION
ArtRand/currennt
Modified fork of CURRENNT https://sourceforge.net/projects/currennt/
ArtRand/dcos-commons
ArtRand/dotfiles
settings and envs
ArtRand/go
The Open Source Data Science Masters
ArtRand/grass-demo
ArtRand/HDP_models
signalAlign hierarchical Dirichlet process models
ArtRand/linfa
A Rust machine learning framework.
ArtRand/marginAlign
UCSC Nanopore
ArtRand/marginPhase
ArtRand/mesos-spark-integration-tests
Mesos Integration Tests on Docker/Ec2
ArtRand/NA12878
Data and analysis for NA12878 genome on nanopore
ArtRand/nanonet
First generation RNN basecaller
ArtRand/noodles
Bioinformatics I/O libraries in Rust
ArtRand/Parcours
# Under Construction
ArtRand/roughly
Smith-Waterman in Rust
ArtRand/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
ArtRand/sonLib
Small general purpose library for C and Python with focus on bioinformatics.
ArtRand/spoa
Partial order alignment consensus tool
ArtRand/spoa-rs
A rust wrapper for the spoa C++ partial order alignment library
ArtRand/toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
ArtRand/toil-marginAlign
Toil-based marginAlign and SignalAlign pipeline
ArtRand/toil-methylseq
Pipeline for WGBS data
ArtRand/toil-signalAlign
Toil scripts for signalAlign analysis of ONT data
ArtRand/vg
tools for working with variation graphs