Pinned Repositories
awesome-drug-discovery-knowledge-graphs
A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)
awesome-drug-pair-scoring
Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)
awesome-explainable-graph-reasoning
A collection of research papers and software related to explainability in graph machine learning.
awesome-shapley-value
Reading list for "The Shapley Value in Machine Learning" (JCAI 2022)
biology-for-ai
learning biology syllabus, geared for machine learning folks
chemicalx
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
jazzy
Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.
onto_merger
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
rexmex
A general purpose recommender metrics library for fair evaluation.
SubTab
The official implementation of the paper, "SubTab: Subsetting Features of Tabular Data for Self-Supervised Representation Learning"
AstraZeneca's Repositories
AstraZeneca/awesome-drug-discovery-knowledge-graphs
A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)
AstraZeneca/KAZU
Fast, world class biomedical NER
AstraZeneca/jazzy
Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.
AstraZeneca/DiffAbXL
The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".
AstraZeneca/runnable
Runnable
AstraZeneca/peptide-tools
Programs to calculate phys-chem properties of synthetic peptides and proteins: isoelectric point and extinction coefficients.
AstraZeneca/kgem-in-drug-discovery
Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)
AstraZeneca/vlm
Official implementation for "Diffusion Instruction Tuning"
AstraZeneca/biomedical-kg-topological-imbalance
Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)
AstraZeneca/napari-wsi
A plugin to read whole slide images within napari.
AstraZeneca/MCPL
Official implementation for "An image is worth multiple words: discovering object level concepts using multi-concepts prompts learning" [ICML 2024]]
AstraZeneca/multimodal-python-course
The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science
AstraZeneca/MVDA_exploration_tools
Multivariate data analysis (MVDA) exploration tool is a Python library utilizing the scikit-learn library for partial least squares (PLS) and principal components analysis (PCA).
AstraZeneca/maraca
R package for the creation of "maraca" plots
AstraZeneca/metabolic_classifier
AstraZeneca/PerfCam
PoC Code for PerfCam: Digital Twinning for Production Lines Using 3D Gaussian Splatting and Vision Models
AstraZeneca/bone_challenge
code for Bone Challenge
AstraZeneca/e2-bioprotac
Bioinformatics data analyses - Taylor J. D. et al., Communications Biology 2024, doi: 10.1038/s42003-024-06803-4
AstraZeneca/ISpyMSI
AstraZeneca/lung-tumour-mice-mri
AstraZeneca/Ovarian_genomics_HRD
This repository contains the applicable source code that was used for data processing, visualisation and statistical analysis for a publication titled " Patterns of genomic instability in > 2000 patients with ovarian cancer across six clinical trials evaluating olaparib"
AstraZeneca/persist
This provides the necessary code and a short tutorial to run PersiST, an exploratory tool for spatial 'omics datasets.
AstraZeneca/G-SPAID
G-function Area Spatial Proximity Analysis Independent of cell Density
AstraZeneca/HandyCT
AstraZeneca/mcpl.github.io
AstraZeneca/NurtureSubmission
AstraZeneca/PatchExtractor
AstraZeneca/persist-seq-galaxy-tools-setup
AstraZeneca/qsuse
R library that provides an import mechanism like python to import local source files. It is not meant to replace library(), or doublecolon:: prefixing
AstraZeneca/safeenv
Safe R environment that raises an error if a key has never been defined, instead of returning NULL