Pinned Repositories
awesome-drug-discovery-knowledge-graphs
A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)
awesome-drug-pair-scoring
Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)
awesome-explainable-graph-reasoning
A collection of research papers and software related to explainability in graph machine learning.
awesome-shapley-value
Reading list for "The Shapley Value in Machine Learning" (JCAI 2022)
biology-for-ai
learning biology syllabus, geared for machine learning folks
chemicalx
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
kallisto
Efficiently calculate 3D-features for quantitative structure-activity relationship approaches.
onto_merger
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
rexmex
A general purpose recommender metrics library for fair evaluation.
SubTab
The official implementation of the paper, "SubTab: Subsetting Features of Tabular Data for Self-Supervised Representation Learning"
AstraZeneca's Repositories
AstraZeneca/onto_merger
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
AstraZeneca/jazzy
Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.
AstraZeneca/KAZU
Fast, world class biomedical NER
AstraZeneca/kallisto
Efficiently calculate 3D-features for quantitative structure-activity relationship approaches.
AstraZeneca/runnable
Runnable
AstraZeneca/kgem-in-drug-discovery
Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)
AstraZeneca/peptide-tools
Programs to calculate phys-chem properties of synthetic peptides and proteins: isoelectric point and extinction coefficients.
AstraZeneca/napari-wsi
A plugin to read whole slide images within napari.
AstraZeneca/biomedical-kg-topological-imbalance
Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)
AstraZeneca/roo
A package and environment manager for R
AstraZeneca/multimodal-python-course
The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science
AstraZeneca/Machine-Learning-for-Predicting-Targeted-Protein-Degradation
The code was developed for training diverse ML and DL models to predict PROTACs degradation. Data cleaning for two public datasets, PROTAC-DB and PROTACpedia, are also included. PROTACs are of high interest for all disease areas of AZ and thus predicting their degradation is of general interest.
AstraZeneca/ConvCaps-DR
Tensorflow-Keras implementation of deep Convolutional Capsule Networks with Dynamic Routing algorithm
AstraZeneca/MVDA_exploration_tools
Multivariate data analysis (MVDA) exploration tool is a Python library utilizing the scikit-learn library for partial least squares (PLS) and principal components analysis (PCA).
AstraZeneca/SelfPAD
The official implementation of "Improving Antibody Humanness Prediction using Patent Data".
AstraZeneca/maraca
R package for the creation of "maraca" plots
AstraZeneca/MCPL
Official implementation for "An image is worth multiple words: discovering object level concepts using multi-concepts prompts learning" [ICML 2024]]
AstraZeneca/qscheck
An R library to perform assertions and decision on input arguments.
AstraZeneca/adhce
AstraZeneca/dpp_imp
Improved clinical data imputation via classical and quantum determinantal point processes
AstraZeneca/trim21-bioprotac
Bioinformatics data analyses - Fletcher A. et al., Nature Communications 2023, doi: 10.1038/s41467-023-42546-2
AstraZeneca/verbReduce
AstraZeneca/arrayedCRISPRscreener
The goal of arrayedCRISPRscreener is to simulate arrayed CRISPR screening data for the purpose of benchmarking data analysis tools as well as power calculation.
AstraZeneca/CKD_molecular_stratification
AstraZeneca/mcpl.github.io
AstraZeneca/metabolic_classifier
AstraZeneca/persist-seq-galaxy-tools-setup
AstraZeneca/qsuse
R library that provides an import mechanism like python to import local source files. It is not meant to replace library(), or doublecolon:: prefixing
AstraZeneca/reactive6
Reactive R6 models for Shiny
AstraZeneca/safeenv
Safe R environment that raises an error if a key has never been defined, instead of returning NULL