Pinned Repositories
awesome-drug-discovery-knowledge-graphs
A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)
awesome-drug-pair-scoring
Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)
awesome-explainable-graph-reasoning
A collection of research papers and software related to explainability in graph machine learning.
awesome-shapley-value
Reading list for "The Shapley Value in Machine Learning" (JCAI 2022)
biology-for-ai
learning biology syllabus, geared for machine learning folks
chemicalx
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
kallisto
Efficiently calculate 3D-features for quantitative structure-activity relationship approaches.
onto_merger
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
rexmex
A general purpose recommender metrics library for fair evaluation.
SubTab
The official implementation of the paper, "SubTab: Subsetting Features of Tabular Data for Self-Supervised Representation Learning"
AstraZeneca's Repositories
AstraZeneca/awesome-explainable-graph-reasoning
A collection of research papers and software related to explainability in graph machine learning.
AstraZeneca/judgyprophet
Forecasting for knowable future events using Bayesian informative priors (forecasting with judgmental-adjustment).
AstraZeneca/skywalkR-graph-features
Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including recommender systems.
AstraZeneca/CTELC-Patient-Attrition-Model
Clinical Trial Enrollment Life Cycle (CTELC) modeling project aims to leverage "industry-wide" data to understand key drivers and build predictive models. Patient attrition, also referred to as dropout or patient withdrawal, occurs when patients enrolled in a clinical trial either withdraw or are lost to follow-up by the clinical site and trial sponsor.
AstraZeneca/Tendril
This repository contains R package code for calculating tendril plots.
AstraZeneca/GIM
gene interaction matrices, a novel approach to using ConvNets on gene expression data