Atkinson-Lab/Tractor

Issues

• Highly inflated p-value in Tractor GWAS

  #41 opened a month ago by ryshi06
  2

• Question regarding VCFs and issue with the R script

  #36 opened 23 days ago by EfraMP
  3

• Support for mixed models

  #40 opened a month ago by la-mendicino
  0

• Query cohort imputed with TOPMed reference panel (Michigan server hg38 build)

  #24 opened 4 months ago by samreenzafer
  1

• Multi-ancestry meta-analysis

  #38 opened 4 months ago by sarahcolbert
  1

• Index error using imputed VCF when extracting tracts

  #31 opened 6 months ago by silviaadiz
  6

• Inclusion of stderr and other possible enhancements

  #34 opened 6 months ago by kscott-1
  0

• No gzip support in run_tractor.R

  #32 opened 6 months ago by kscott-1
  0

• GWAS with genotype x phenotype interaction

  #12 opened 8 months ago by MrLocuace
  1

• Differences in AF between original version and v 1.1.0

  #27 opened 8 months ago by nick338
  2

• NaNs for some variants in output

  #29 opened 9 months ago by samreenzafer
  5

• Error while running run_tractor.R

  #30 opened 9 months ago by EfraMP
  3

• Getting errors after running extract_tracts.py

  #28 opened 10 months ago by EfraMP
  2

• RunTractor.py ERROR Phenotype ID must match with Hapdose file ID

  #25 opened a year ago by samreenzafer
  2

• `extract_tracks.py`: NameError: name 'output_files' is not defined

  #26 opened a year ago by biona001
  7

• Possibility of outputting SNP effect variance in Tractor output

  #23 opened a year ago by nick338
  1

• Dependency on RFMIX Output Format

  #21 opened a year ago by kscott-1
  2

• NaN output

  #13 opened a year ago by spaul-genetics
  2

• Related samples

  #19 opened a year ago by Wanying-Zhu
  1

• Version (number) of Tractor

  #22 opened a year ago by ZikunY
  1

• IndexError: list index out of range

  #20 opened 2 years ago by ChrisK1988
  6

• How were the painted karyograms made?

  #14 opened 2 years ago by Naughtoncolin
  2

• Hail does only linear and not logistic regression?

  #17 opened 2 years ago by guidebortoli
  1

• IndexError

  #18 opened 2 years ago by ZikunY
  2

• Does the pheno file accepts missing values for a variable/covariable?

  #16 opened 2 years ago by guidebortoli
  1

• Error message in the tutorial

  #15 opened 2 years ago by ZikunY
  2

• Cannot find example of phenotype file

  #11 opened 3 years ago by MrLocuace
  2

• Example Hail code for binary traits

  #7 opened 3 years ago by secastel
  6

• Switch from per chromosome to autosomes

  #8 opened 3 years ago by hidyverse
  2

• Error in ExtractTracks.py Script

  #6 opened 3 years ago by EEPuckett
  1

• Typo on line 34 of ExtractTracts-Flags.py

  #1 opened 4 years ago by sgagliano
  1