Pinned Repositories
alisertib-analysis
CloudASM
ISOSCELES
ISOSCELES operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 dataset with multi-subject single-cell RNA sequencing data, and facilitates analysis of drug and cell connectivity as a function of expression discordance from multiple perspectives.
ISOSCELES-dataProcessing
Processing pipelines used in Suter et al.
OrthologAL
scZeroDay
spatial_transciptomics_GBM
It analyzes space ranger output of 11 brain tumor samples to see specific genes location,how it is expressed and also testing multiple experiments on this spatial data with our pipeline
SpinalCord_RM1
Applying spatial transcriptomics on spinalcord data
tableApp
UM002-scPerturbation
single-cell RNA sequencing analysis of xenograft tumors
The Ayad Laboratory's Repositories
AyadLab/alisertib-analysis
AyadLab/CloudASM
AyadLab/ISOSCELES
ISOSCELES operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 dataset with multi-subject single-cell RNA sequencing data, and facilitates analysis of drug and cell connectivity as a function of expression discordance from multiple perspectives.
AyadLab/ISOSCELES-dataProcessing
Processing pipelines used in Suter et al.
AyadLab/OrthogonAL
OrthogonAL leverages the data mining tool biomaRt to access different gene sets from ENSEMBL, and facilitates the interaction with these servers without the need for any scripting , Researchers can effortlessly input their Seurat object, a standard datatype format for single-cell RNA sequencing , single-nuclei or spatial data
AyadLab/scZeroDay
AyadLab/spatial_transciptomics_GBM
It analyzes space ranger output of 11 brain tumor samples to see specific genes location,how it is expressed and also testing multiple experiments on this spatial data with our pipeline
AyadLab/SpinalCord_RM1
Applying spatial transcriptomics on spinalcord data
AyadLab/tableApp
AyadLab/UM002-scPerturbation
single-cell RNA sequencing analysis of xenograft tumors