Git LFS for the model file

[russchua]

Good Day @BBillot ,

Thank you for releasing the source code and model for SynthSeg.
I am interested to try it out, but experience difficulties getting the model SynthSeg.h5 file that you have provided.

When I perform a git lfs pull, I am told that...

batch_response: Git LFS is disabled for this repository
error: failed to fetch some objects from 'https://github.com/BBillot/SynthSeg.git/info/lfs'

A solution to this would be greatly appreciated!

Thank you very much!

[BBillot]

Dear Russ Chua, just out of curiosity, doesn't it work if you simply clone the repo ? I don't think I used git lfs to upload the model, so that would explain why git lfs doesn't work. Best regards, Benjamin Le jeu. 2 juil. 2020 à 11:04, Russ Chua <notifications@github.com> a écrit :

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Good Day @BBillot <https://github.com/BBillot> , Thank you for releasing the source code and model for SynthSeg. I am interested to try it out, but experience difficulties getting the model SynthSeg.h5 file that you have provided. When I perform a git lfs pull, I am told that... batch_response: Git LFS is disabled for this repository error: failed to fetch some objects from 'https://github.com/BBillot/SynthSeg.git/info/lfs' A solution to this would be greatly appreciated! Thank you very much! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#2>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHTKEZCLBDTYGSGC6BDU3C3RZRLRHANCNFSM4OOXH5ZA> .

[russchua]

Dear Benjamin,

Thanks for the swift response. Yeah it doesn't work if I simply clone the repo.
I get the following error:
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "h5py/h5f.pyx", line 88, in h5py.h5f.open OSError: Unable to open file (file signature not found)
and the model size is only 8 kb.

Alternatively, could you host the weights on a file sharing site that I could do a wget from?

Thanks so much!

[BBillot]

Okay it should be fixed now. I successfully cloned the repository and made it work (you'll see that the model is not 8kb anymore...) It turned out to be an upload issue, as my network is not as powerful as the one I had at work, and it keeps playing me little tricks. Let me know if you have any other issues, Benjamin. Le jeu. 2 juil. 2020 à 11:47, Russ Chua <notifications@github.com> a écrit :

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Dear Benjamin, Thanks for the swift response. Yeah it doesn't work if I simply clone the repo. I get the following error: OSError: Unable to open file (file signature not found) and the model size is only 8 kb. Alternatively, could you host the weights on a file sharing site that I could do a wget from? Thanks so much! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#2 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHTKEZCFLHA4LEW45WZH6BDRZRQVNANCNFSM4OOXH5ZA> .

[russchua]

Thanks for updating your repo! It works now!