BBillot/SynthSeg

Issues

• Synthseg on conda/pip

  #100 opened 14 days ago by MariusCausemann
  0

• questions about downsampling (blurring voxels)

  #99 opened a month ago by yhao-z
  0

• Future Plans for MATLAB Version？

  #98 opened 2 months ago by Indigovo
  0

• about the posterior

  #97 opened 2 months ago by AndyCA111
  0

• Installation issue

  #93 opened 3 months ago by Shreyas-Bhat
  11

• AttributeError: module 'numpy' has no attribute 'object'.

  #92 opened 3 months ago by rullator
  4

• cuda version is very old: updating to 11.4or newer to allow python installs of cuda-toolkit

  #94 opened 3 months ago by nimzodisaster
  14

• Python requirements and versions matching

  #90 opened 4 months ago by jennykim1016
  7

• [question] which modality should I use to get the best results?

  #96 opened 3 months ago by neuronflow
  2

• [question] how to specify the GPU which should be used?

  #95 opened 3 months ago by neuronflow
  2

• failed to predict on CPU

  #88 opened 4 months ago by Neglecteder
  2

• 2.0 models missing from models directory

  #91 opened 4 months ago by hvgazula
  1

• Error running tutorial script (1-generation_visualisation.py) in newer versions of tensorflow

  #89 opened 4 months ago by hvgazula
  2

• Tutorial for re-training SynthSeg on non-brain datasets

  #87 opened 5 months ago by naga-karthik
  1

• Force resampling

  #86 opened 5 months ago by loneblues
  1

• Error while following the training example

  #83 opened 9 months ago by pjsjongsung
  6

• insula subsegmentation

  #82 opened 9 months ago by qwang0225
  2

• lab2im version errors

  #85 opened 9 months ago by htregidgo
  2

• Clarification on GMM sampling

  #80 opened 10 months ago by naga-karthik
  1

• synthseg-robust 2.0

  #84 opened 10 months ago by elebot4
  1

• InvalidArgumentError: 4D Input Expected with SynthSeg_predict.py on MacOS M2

  #81 opened 10 months ago by noahrn
  7

• Synthseg+ training

  #65 opened 10 months ago by gres05
  5

• Segmentation Discrepancies Analysis

  #76 opened 10 months ago by NasrinPrenuvo
  3

• Clarification on Fine-Tuning with real images

  #77 opened 10 months ago by NasrinPrenuvo
  4

• ValueError: Error when checking input: expected labels_input to have 4 dimensions, but got array with shape (1, 216, 256, 8, 1)

  #79 opened 10 months ago by whdong-whu
  1

• \

  #78 opened a year ago by whdong-whu
  0

• random segmentation failures

  #75 opened a year ago by ZiyaoShang
  3

• Run inference directly on the original NIFTI image

  #71 opened a year ago by dongdongtong
  2

• Resampled image is not saved

  #74 opened a year ago by Ede1994
  2

• Synthesize image for different anantomical templates

  #73 opened a year ago by Tianyangg
  2

• CSF label left out of "labels table.txt"

  #72 opened a year ago by robbwh
  1

• Fine-tuned model on monkey anatomy?

  #53 opened a year ago by alexisthual
  5

• provide bids-app

  #69 opened a year ago by yarikoptic
  1

• "loss: nan" during re-training

  #63 opened a year ago by Haibot-Lee
  2

• /

  #67 opened a year ago by Satob95
  0

• Input shapes at inference

  #66 opened a year ago by manigalati
  7

• Training with Label maps of different size and resolution

  #64 opened a year ago by Satob95
  3

• v2 model file missing from repository

  #62 opened a year ago by jhlegarreta
  2

• Recommended GPU

  #58 opened a year ago by mishaberegov
  15

• Non-sequential label

  #61 opened 2 years ago by Kimmm-pzl
  2

• High resolution T1w image segmentation seems

  #60 opened 2 years ago by alexisthual
  8

• How to split the specified areas?

  #59 opened 2 years ago by Kimmm-pzl
  4

• Running on Mac M1

  #57 opened 2 years ago by emilljungberg
  5

• The volume calculation per segmentation is given in mm³ right?

  #56 opened 2 years ago by gladomat
  1

• Compatibility issue with requirements_3.8

  #52 opened 2 years ago by rbonicel
  2

• Can't run on GPU with python 3.8

  #49 opened 2 years ago by mafortin
  11

• Matlab input folder name can't be too short

  #51 opened 2 years ago by zacheidex
  3

• SynthSeg fails on a constructed template T1w scan

  #47 opened 2 years ago by Fjr9516
  10

• SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining

  #50 opened 2 years ago by zzzyzh
  1

• Q about brain_generator constructor prior_means variable when prior_distributions='uniform'

  #48 opened 2 years ago by paul-reiners
  1