Symlink all samples on a run when a run ID is supplied with no sample IDs file
dfornika opened this issue · 0 comments
dfornika commented
When a --run-id
is supplied with no --ids-file
, we get this error:
Traceback (most recent call last):
File "symlink-seqs", line 618, in <module>
main(args)
File "symlink-seqs", line 577, in main
sample_ids = parse_ids_file(args.ids_file)
File "symlink-seqs", line 404, in parse_ids_file
with open(ids_file_path, 'r') as f:
TypeError: expected str, bytes or os.PathLike object, not NoneType
We should support a mode where all samples on a run are symlinked when a run ID is supplied with no sample IDs file.