BD2KGenomics/brca-website-deprecated

Issues

• autocomplete search bug

  #96 opened 9 years ago by benedictpaten
  3

• create OMIM ontology column (using Condition_ID_type,Condition_ID_value,Condition_category)

  #88 opened 8 years ago by benedictpaten
  2

• help text fix

  #97 opened 9 years ago by benedictpaten
  1

• create URLs for sources, for example lovd links for variants in the lovd database

  #87 opened 9 years ago by benedictpaten
  0

• Build hyperlinks to the genome browser for the variant details page

  #61 opened 9 years ago by melissacline
  2

• change "px" in css to "em" or "rem" for scalibility

  #62 opened 9 years ago by MollyZhang
  0

• create abbreviated amino acid strings for table

  #86 opened 9 years ago by benedictpaten
  0

• Support searches of the form "<gene> <variant>"

  #80 opened 9 years ago by melissacline
  1

• Replace the Gene pull-down menu with radio buttons, to make the gene selection more overt.

  #78 opened 9 years ago by melissacline
  1

• email Yohan for LOVD permission

  #55 opened 9 years ago by MollyZhang
  0

• Lollipop bounded zoom functionality

  #91 opened 9 years ago by cmarkello
  2

• Implement variant table lollipop plot

  #90 opened 9 years ago by cmarkello
  0

• Replace the term "mutation" with "variants" in Lollipop plots

  #84 opened 9 years ago by timothydsmith
  0

• restyling of search box in the variant page

  #64 opened 9 years ago by MollyZhang
  0

• Combine About pages

  #67 opened 9 years ago by maryjgoldman
  0

• Add comment to the help text to explain p:? HGVS notation for intronic positions

  #48 opened 9 years ago by melissacline
  0

• create bic strings for table from hgvs cDNA strings

  #85 opened 9 years ago by benedictpaten
  0

• make more statics/lollipop for rest of data

  #54 opened 9 years ago by MollyZhang
  0

• Revise lollipops to distinguish pathogenicity vertically

  #83 opened 9 years ago by melissacline
  0

• integrate thisSite.md into the About menu

  #66 opened 9 years ago by melissacline
  0

• On the home page, in the gray box, add an explicit example that includes one of the two gene IDs.

  #79 opened 9 years ago by melissacline
  1

• Make the ENIGMA logo as large in size as CIMBA

  #76 opened 9 years ago by melissacline
  0

• Rename Abbrev AA Change column in Variants table as BIC Protein.

  #74 opened 9 years ago by melissacline
  0

• Rename HGVS cDNA column in Variants table to HGVS nucleotide

  #72 opened 9 years ago by melissacline
  0

• Rename the BIC column in the Variants table to BIC Nucleotide

  #73 opened 9 years ago by melissacline
  0

• Rename ClinVar Link column in Variant table to Source.

  #75 opened 9 years ago by melissacline
  0

• Remove the ClinVar link from the variants table, but retain it on the details page

  #82 opened 9 years ago by melissacline
  1

• Add a beta banner to the front of the web site

  #81 opened 9 years ago by melissacline
  0

• in variant detail page: remove "novel or update", remove "affected status"

  #59 opened 9 years ago by MollyZhang
  0

• display data beyond enigma: ClinVar, 1000 genomes, BIC, ExAC, LOVD

  #53 opened 9 years ago by MollyZhang
  0

• Move the number of hits to not be hidden by the autocomplete menu

  #77 opened 9 years ago by melissacline
  0

• add contribution text for our group in website

  #56 opened 9 years ago by MollyZhang
  1

• Stop Help buttons from wrapping

  #69 opened 9 years ago by maryjgoldman
  0

• Make mouse pointer look clickable on text in variant table

  #71 opened 9 years ago by maryjgoldman
  1

• Links in table go to details page before ClinVar

  #68 opened 9 years ago by maryjgoldman
  0

• make links in footer work

  #65 opened 9 years ago by MollyZhang
  0

• replace spaces in tsv file headers to underscore

  #63 opened 9 years ago by MollyZhang
  0

• make mouse pointer look clickable on help buttons on variant detail page

  #70 opened 9 years ago by maryjgoldman
  0

• autocomplete function in search

  #52 opened 9 years ago by MollyZhang
  0

• update Enigma variant data

  #57 opened 9 years ago by MollyZhang
  0

• in variant detail page, add human readable text to OMIM column. (BTW I believe the the OMIM ID can be easily interpreted here: http://www.omim.org/)

  #60 opened 9 years ago by MollyZhang
  0

• add BIC nomenclature for exonic variant and IVS nomenclature for intronic variant (as specified by "alternative designation" column in the spreadsheet)

  #58 opened 9 years ago by MollyZhang
  0

• change color of page number when focused

  #50 opened 9 years ago by MollyZhang
  0

• change search box to bootstrap grid so that it could scale down with mobile devices

  #49 opened 9 years ago by MollyZhang
  0

• fix issue with Navigation bar menu on mobile

  #51 opened 9 years ago by MollyZhang
  0

• Indicate blank or intronic HGVS protein for p:? variants

  #45 opened 9 years ago by melissacline
  2

• Display an example search string by the search boxes

  #43 opened 9 years ago by melissacline
  0

• On front page, "?" by Search does not yet work

  #44 opened 9 years ago by melissacline
  1

• it would be useful to show the total number of hits next to the search box. This would be good for the title page and for the table page.

  #46 opened 9 years ago by melissacline
  1

• On the the main page: if there is only one variant left, show the fully matched variant name together with the variant classification without going to the search page, unless the user pressed the search button.

  #47 opened 9 years ago by melissacline
  0