BEFH
Senior Scientist in Alison Goate's lab at Mount Sinai in NY. Most lab work has been moved to a central repository: http://bit.ly/goategit
Mount Sinai Hospital (@marcoralab)New York, NY
Pinned Repositories
aj_enriched_af
anaconda-publish
Github Action to deploy conda package to Anaconda repository
docker_frigate
Modified Frigate docker with neolink
flippyr
Find reference mismatches in PLINK filesets and fix them.
LSFparse
Parse LSF stdout files and tabulate key measures
minerva_servers
Singularity version of Minerva VSCode script
sinai_thesis
LaTeX Template for Mount Sinai Theses
snakemake-executor-plugin-lsf
A Snakemake executor plugin for submitting jobs to a LSF cluster
snakemake-executor-plugin-lsf-jobstep
A Snakemake executor plugin for running bjobs jobs inside of LSF jobs (meant for internal use by snakemake-executor-plugin-lsf)
SSHFS_Restart
Restart SSHFS on a Mac
BEFH's Repositories
BEFH/snakemake-executor-plugin-lsf
A Snakemake executor plugin for submitting jobs to a LSF cluster
BEFH/flippyr
Find reference mismatches in PLINK filesets and fix them.
BEFH/minerva_servers
Singularity version of Minerva VSCode script
BEFH/docker_frigate
Modified Frigate docker with neolink
BEFH/docker_r_evaladmix
BEFH/snakemake-executor-plugin-lsf-jobstep
A Snakemake executor plugin for running bjobs jobs inside of LSF jobs (meant for internal use by snakemake-executor-plugin-lsf)
BEFH/anaconda-publish
Github Action to deploy conda package to Anaconda repository
BEFH/archiving
BEFH/bioconda-recipes
Conda recipes for the bioconda channel.
BEFH/BridgePRS
Estimation of trans-ancestry PRS
BEFH/docker_bcftools-htslib-samtools
A docker container with the whole htslib family
BEFH/docker_eagle
A docker for the Eagle phasing software
BEFH/docker_GENESIS_gwasamplefilt
GENESIS environment for GWASampleFiltering
BEFH/docker_gnomix
A docker container for gnomix local ancestry inference
BEFH/docker_matrix_test
BEFH/docker_OpenADMIXTURE
Docker container for running OpenADMIXTURE
BEFH/docker_R_gwasamplefilt
R environment for GWASampleFiltering
BEFH/docker_r_procadmix
BEFH/docker_ruth
Docker for Ruth HWE
BEFH/docker_sra-tools
BEFH/lsf
Snakemake profile for running jobs on an LSF cluster
BEFH/micromamba-docker
Rapid builds of small Conda-based containers using micromamba.
BEFH/miller
Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON
BEFH/MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics
BEFH/nextflow
A DSL for data-driven computational pipelines
BEFH/OpenADMIXTURE.jl
BEFH/rstudio-server-conda
Run Rstudio Server in a conda environment
BEFH/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
BEFH/test
test
BEFH/website
Personal Webpage