/docker_OpenADMIXTURE

Docker container for running OpenADMIXTURE

Primary LanguageJulia

OpenADMIXTURE docker container

This is a repo that contains the code for a docker container with OpenADMIXTURE.

The original repository can be found here.

Installation

To install the container, run the following using docker:

docker pull befh/openadmxture

or the following with singularity:

singularity pull --name bcftools.img docker://befh/openadmixture:latest

To use with Snakemake, you do not need to install. Just put the following in the Snakefile:

container: 'docker://befh/openadmixture:latest'

Then run with snakemake --use-singularity see https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html for more info.

Usage

To run with docker, docker run openadmixture [ARGS].

To run with singularity, singularity run openadmixture.img [ARGS].

To access tools other than openadmixture, open a shell.