BGI-Qingdao/TGS-GapCloser

Can I use contigs files to fill in the gaps?

yangchouxianyu opened this issue · 2 comments

yangchouxianyu commented

Thanks for developing software.
Can I use contigs files to fill in the gaps? To be specific ,--reads are contigs files such as output file of hifiasm. Can it be used like this?

adonis316 commented

Sorry for the late response. Absolutely Sure. You can use contigs as error-corrected long reads to fill the gaps in the genome. There is no need to further polish contigs before filling.

Mengyang

yangchouxianyu commented

Thank you for your answer.