BGI-Qingdao/TGS-GapCloser

Issues

• tgsgapcloser: line 628: 1268093 Segmentation fault (core dumped)

  #86 opened 4 months ago by yuan102379
  0

• Use pre-assembled contigs for gap filling

  #85 opened 4 months ago by chenzixi07
  0

• /home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed

  #84 opened 7 months ago by Hanjiangna
  1

• TGS reads input

  #83 opened 6 months ago by Hanjiangna
  2

• tgsgapcloser: line 645: 3044102 Aborted (core dumped)

  #73 opened 8 months ago by MonsterLaplace
  4

• How to check the correctness of filling gaps?

  #75 opened 8 months ago by luca-Wang
  1

• insufficient memory when running mnimap2

  #72 opened 8 months ago by XiaoxingFan
  1

• TGS reads

  #82 opened 8 months ago by ad010902
  1

• scaffold become truncated after TGSGapCandidate

  #81 opened 9 months ago by smallfishcui
  1

• error: empty target sequences set!

  #80 opened 9 months ago by Marison-1
  2

• error with racon

  #79 opened 9 months ago by zhengyanstu
  1

• Why not output to folder?

  #78 opened 9 months ago by Isoris
  0

• huge gaps not filled

  #77 opened 10 months ago by gforg34
  5

• How to input multiple libraries

  #76 opened 10 months ago by bismarck1008
  0

• Unable to move beyond mapping the reads

  #43 opened 3 years ago by amit4mchiba
  10

• ERROR: line 645: 16242 Aborted (core dumped)

  #74 opened a year ago by Bank-tidy
  4

• TGS-GapCloser：tgsgapcloser: line 374: 1545 Aborted

  #71 opened a year ago by suying77
  4

• tgsgapcloser got Killed in step2.2 TGSGapCandidate

  #65 opened a year ago by JhinAir
  4

• Can I use RagTag to assemble fasta with N and use TGS-GapCloser to fill holes?

  #70 opened a year ago by lanyunxin
  1

• Pilon does not work within tgsgapclpser

  #69 opened a year ago by adlyabdalla
  2

• getopt error for --minmap_arg and its options

  #68 opened a year ago by ChathumadaviE
  6

• tgsgapcloser: line 645: 81794 Aborted (core dumped)

  #64 opened a year ago by Ssmile333
  5

• Can I use contigs files to fill in the gaps?

  #67 opened a year ago by yangchouxianyu
  2

• Assertion `items.size() == 3'

  #66 opened a year ago by Johnsonzcode
  5

• unable to close gaps using pacbio CCS reads

  #63 opened 2 years ago by shailij246
  1

• Can Tgsgaploser fill gaps in the genome at the chromosome level?

  #62 opened 2 years ago by XXH123a
  4

• TGS_GapCloser get killed in step 2.1 and step 4.1

  #55 opened 2 years ago by jtndr011
  32

• bin/tgsgapcloser: line 443: 3053 Bus error

  #57 opened 2 years ago by DiegoSafian
  1

• step4.2 finish ,but only test.gapclose.fa.updated_scaff_infos file

  #56 opened 2 years ago by feiyu007
  2

• chromosome much lengthened after filling gaps

  #51 opened 2 years ago by tinyfallen
  3

• TGS-gapcloser: Aaborted (core dumped)

  #54 opened 2 years ago by liuxin-21d
  3

• Does TGS-GapCloser connect contigs with overlaps to generate a longer scaffold?

  #53 opened 2 years ago by shaobinzhong
  3

• Passing parameters to RACON?

  #52 opened 2 years ago by cement-head
  1

• why use the reads as target

  #50 opened 2 years ago by tinyfallen
  7

• Combine two assemblies

  #48 opened 2 years ago by oushujun
  3

• tgsgapcloser: line 527: 1616435 Aborted

  #49 opened 3 years ago by LiaOb21
  4

• Is 10x-linked reads availble for TGS-GapCloser?

  #45 opened 3 years ago by ClarenceHsiang
  1

• Input NGS data.

  #46 opened 3 years ago by 123chenshixin
  2

• Terminate called after throwing an instance of 'std::out_of_range' what(): map::at

  #47 opened 3 years ago by alexvasilikop
  1

• Potential misassembly?

  #44 opened 3 years ago by MattHuff
  1

• Memory problem

  #42 opened 3 years ago by leone93
  5

• Can I use both long reads and NGS reads with error correction?

  #41 opened 3 years ago by CGsTree
  5

• TGS-GapCloser支持Pacbio HiFi数据吗？

  #40 opened 3 years ago by Deng-Yuan
  1

• --minmap_arg arg not present in conda install

  #36 opened 3 years ago by charlesfeigin
  1

• Core dump

  #39 opened 3 years ago by markcharder
  2

• big RAM required

  #38 opened 3 years ago by ardy20
  1

• Conda invoke

  #37 opened 3 years ago by ardy20
  3

• -g_check flag

  #35 opened 3 years ago by KyleEwart
  1

• run time too long

  #33 opened 4 years ago by zhoudreames
  3

• paf file from minimap2

  #32 opened 4 years ago by wyim-pgl
  1