BGI-QingDao

Pinned Repositories

GEM3D_toolkit
A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data
Language:Python101
HAST
HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy
Language:C++18 2 01
HicTrioBinning
Language:Shell11 3 20
MetaTrass
Metagenomics Taxonomic Reads Assembly Single-Species
Language:Rebol16 2 14
ProcessGroupMonitor
A simple tool to monitor a process group and record its CPU, MEM and time cost.
Language:C++16 3 01
SLR-superscaffolder
A scaffold assembling pipeline for stLFR reads.
Language:C++15 4 51
stlfr2supernova_pipeline
A pipeline to de novo assemble the stLFR reads using Supernova Assembler
Language:Shell21 3 45
strobemer_cpptest
An c++ implemention of strobemer
Language:C++9 4 21
TGS-GapCloser
A gap-closing software tool that uses long reads to enhance genome assembly.
Language:C++171 7 7912
VT3D
VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas
Language:JavaScript13 3 00

BGI-QingDao 's Repositories

BGI-Qingdao/TGS-GapCloser
A gap-closing software tool that uses long reads to enhance genome assembly.
Language:C++171 7 7912
BGI-Qingdao/stlfr2supernova_pipeline
A pipeline to de novo assemble the stLFR reads using Supernova Assembler
Language:Shell21 3 45
BGI-Qingdao/HAST
HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy
Language:C++18 2 01
BGI-Qingdao/MetaTrass
Metagenomics Taxonomic Reads Assembly Single-Species
Language:Rebol16 2 14
BGI-Qingdao/ProcessGroupMonitor
A simple tool to monitor a process group and record its CPU, MEM and time cost.
Language:C++16 3 01
BGI-Qingdao/VT3D
VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas
Language:JavaScript13 3 00
BGI-Qingdao/HicTrioBinning
Language:Shell11 3 20
BGI-Qingdao/GEM3D_toolkit
A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data
Language:Python101
BGI-Qingdao/GOMC
Language:R80
BGI-Qingdao/Symbiont-Screener
a reference-free tool to separate host sequences from symbionts for error-prone long reads
Language:C++8 3 02
BGI-Qingdao/TGS-GapCloser2
A gap-closing software tool that uses long reads to enhance genome assembly.
Language:C++8 0 01
BGI-Qingdao/Circle-Map-cpp
rewirte part of Realign module in Circle-Map by c++
Language:C++6
BGI-Qingdao/4D-BioReconX
a bioinformatic framework for reconstructing 4D spatial transcriptomics atlas and spatiotemporal analyses+
Language:Jupyter Notebook5 2 00
BGI-Qingdao/SpaGRN
A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.
Language:Python5 1 02
BGI-Qingdao/stLFR_reads_sim
[Develeping] Reads Simulator of stLFR
Language:C++5 3 1
BGI-Qingdao/Lungfish_scRNA_data_analysis
Analysis code for lungfish single cell RNA-seq data
Language:R3 0 01
BGI-Qingdao/VT3D_Browser
Language:Vue30
BGI-Qingdao/Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Language:Python2 1 0
BGI-Qingdao/EMA_SF
Language:C++2
BGI-Qingdao/Planarian4D
Language:Python2
BGI-Qingdao/stacpro
STructure based Alignment and Clustering of PROteins
Language:Python2 2 00
BGI-Qingdao/strobeQV
This script calculates the quality value (QV) based on strobemers.
Language:C++2
BGI-Qingdao/fish10k
Scripts for fish10k project
Language:Perl1 2 0
BGI-Qingdao/scMultimodal
Multimodal integration of various types of sequencing data
Language:Python1 1 00
BGI-Qingdao/SpaSimulator
SRT data simulator
Language:Python1
BGI-Qingdao/Burnett
evolution
Language:Python0 1 00
BGI-Qingdao/Module_completeness
Checks if the given module is complete
BGI-Qingdao/SpaGRN_HomePage
The homepage of SpaGRN project
Language:Vue0 0
BGI-Qingdao/stereopy
A toolkit of spatial transcriptomic analysis.
BGI-Qingdao/ZebrafishHeartRegeneration_project
All scripts for project: zebrafish heart regeneneration
Language:Jupyter Notebook