Pinned Repositories
GEM3D_toolkit
A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data
GOMC
HAST
HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy
HicTrioBinning
MetaTrass
Metagenomics Taxonomic Reads Assembly Single-Species
ProcessGroupMonitor
A simple tool to monitor a process group and record its CPU, MEM and time cost.
SLR-superscaffolder
A scaffold assembling pipeline for stLFR reads.
stlfr2supernova_pipeline
A pipeline to de novo assemble the stLFR reads using Supernova Assembler
TGS-GapCloser
A gap-closing software tool that uses long reads to enhance genome assembly.
VT3D
VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas
BGI-QingDao 's Repositories
BGI-Qingdao/SLR-superscaffolder
A scaffold assembling pipeline for stLFR reads.
BGI-Qingdao/strobemer_cpptest
An c++ implemention of strobemer
BGI-Qingdao/HAST4TGS
A version of HAST for TGS long reads, fast and memory-effiective trio-binning.
BGI-Qingdao/moso_bamboo_resequencing
The pipelines and scripts used in moso bamboo population sequencing
BGI-Qingdao/stLFR_barcode_split
A tool to do barcode splitting for stLFR raw reads
BGI-Qingdao/ExtractNGSReads
extract subset of NGS PE reads
BGI-Qingdao/HAST-SV-FILTER
BGI-Qingdao/HAST410XG
BGI-Qingdao/metaSLR
BGI-Qingdao/stLFR_GapCloser
GapCloser which can use stLFR reads to fill gaps
BGI-Qingdao/stLFRQC
BGI-Qingdao/ContigGapOverlapCheck
BGI-Qingdao/fabulous2.0
BGI-Qingdao/ScaffMisassemblyAnalysis
BGI-Qingdao/stLFR_SMA
solve multiple alignment
BGI-Qingdao/10X2stLFR
convert 10X raw reads into stLFR reads format . ( still within developing)
BGI-Qingdao/Antarctic_Krill_project
The pipelines and scripts used in Antarctic krill project
BGI-Qingdao/SOAPdenovoLR
BGI-Qingdao/stLFR_filter_barcode
Scripts to filter " not so good " barcodes .