/home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed
Opened this issue · 2 comments
Hanjiangna commented
my code
ohup tgsgapcloser --scaff R0301HifiHicOnt.fa --reads R0301.ONT.fa --racon ~/anaconda3/envs/genome/bin/racon --r_round 2 --output racon1 > pipe.log 2> pipe.err
erro.log:
/home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed $MiniMap2 $MINIMAP2_PARAM -t $THREAD $TGS_READS $TMP_INPUT_SCAFTIG > $OUT_PREFIX.sub.paf 2> $OUT_PREFIX.minimap2.01.log
liaoyuwen-github commented
Hello, has your problem been solved? If you solve it, can you share the solution with me?
wiltbb commented
try another calculate nodes may solve this problem.